Kim Keugtae, Chiba Yoko, Kobayashi Azusa, Arai Hiroyuki, Ishii Masaharu
Department of Biotechnology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan.
Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth Science and Technology, Kanagawa, Japan
J Bacteriol. 2017 Oct 3;199(21). doi: 10.1128/JB.00409-17. Print 2017 Nov 1.
is an obligate chemolithoautotrophic bacterium of the phylum and is capable of fixing carbon dioxide through the reductive tricarboxylic acid (TCA) cycle. The recent discovery of two novel-type phosphoserine phosphatases (PSPs) in suggests the presence of a phosphorylated serine biosynthesis pathway; however, the physiological role of these novel-type metal-independent PSPs (iPSPs) in has not been confirmed. In the present study, a mutant strain with a deletion of , the catalytic subunit of iPSPs, was constructed and characterized. The generated mutant was a serine auxotroph, suggesting that the novel-type PSPs and phosphorylated serine synthesis pathway are essential for serine anabolism in As an autotrophic medium supplemented with glycine did not support the growth of the mutant, the reversible enzyme serine hydroxymethyltransferase does not appear to synthesize serine from glycine and may therefore generate glycine and 5,10-CH-tetrahydrofolate (5,10-CH-THF) from serine. This speculation is supported by the lack of glycine cleavage activity, which is needed to generate 5,10-CH-THF, in Determining the mechanism of 5,10-CH-THF synthesis is important for understanding the fundamental anabolic pathways of organisms, because 5,10-CH-THF is a major one-carbon donor that is used for the synthesis of various essential compounds, including nucleic and amino acids. The findings from the present experiments using a deletion mutant have confirmed the physiological role of iPSPs as serine producers and show that serine is a major donor of one-carbon units in Serine biosynthesis and catabolism pathways are intimately related to the metabolism of 5,10-CH-THF, a one-carbon donor that is utilized for the biosynthesis of various essential compounds. For this reason, determining the mechanism of serine synthesis is important for understanding the fundamental anabolic pathways of microorganisms. In the present study, we experimentally confirmed that a novel phosphoserine phosphatase in the obligate chemolithoautotrophic bacterium is essential for serine biosynthesis. This finding indicates that serine is synthesized from an intermediate of gluconeogenesis in In addition, because glycine cleavage system activity and genes encoding an enzyme capable of producing 5,10-CH-THF were not detected, serine appears to be the major one-carbon donor to tetrahydrofolate (THF) in .
是该门中的一种专性化能无机自养细菌,能够通过还原性三羧酸(TCA)循环固定二氧化碳。最近在中发现了两种新型磷酸丝氨酸磷酸酶(PSP),这表明存在磷酸化丝氨酸生物合成途径;然而,这些新型非依赖金属的PSP(iPSP)在中的生理作用尚未得到证实。在本研究中,构建并表征了缺失iPSP催化亚基的突变菌株。产生的突变体是丝氨酸营养缺陷型,这表明新型PSP和磷酸化丝氨酸合成途径对于中的丝氨酸合成代谢至关重要。由于补充甘氨酸的自养培养基不支持突变体的生长,可逆酶丝氨酸羟甲基转移酶似乎不能从甘氨酸合成丝氨酸,因此可能从丝氨酸生成甘氨酸和5,10-亚甲基四氢叶酸(5,10-CH-THF)。在中缺乏生成5,10-CH-THF所需的甘氨酸裂解活性,这支持了这一推测。确定5,10-CH-THF的合成机制对于理解生物体的基本合成代谢途径很重要,因为5,10-CH-THF是一种主要的一碳供体,用于合成各种必需化合物,包括核酸和氨基酸。使用缺失突变体的本实验结果证实了iPSP作为丝氨酸生产者的生理作用,并表明丝氨酸是中的主要一碳单位供体。丝氨酸生物合成和分解代谢途径与5,10-CH-THF的代谢密切相关,5,10-CH-THF是一种用于各种必需化合物生物合成的一碳供体。因此,确定丝氨酸合成机制对于理解微生物的基本合成代谢途径很重要。在本研究中,我们通过实验证实专性化能无机自养细菌中的一种新型磷酸丝氨酸磷酸酶对于丝氨酸生物合成至关重要。这一发现表明丝氨酸是从中糖异生的中间产物合成的。此外,由于未检测到甘氨酸裂解系统活性和编码能够产生5,10-CH-THF的酶的基因,丝氨酸似乎是中的四氢叶酸(THF)的主要一碳供体。