• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

形态学与分子数据对比:以欧洲雅罗鱼属(鲤科)为例的物种复合体修订方法

Contrasting morphology with molecular data: an approach to revision of species complexes based on the example of European Phoxinus (Cyprinidae).

作者信息

Palandačić Anja, Naseka Alexander, Ramler David, Ahnelt Harald

机构信息

First Zoological Department, Vienna Museum of Natural History, Burgring 7, 1010, Vienna, Austria.

Department of Ichthyology and Hydrobiology, Faculty for Biology and Soil, Saint Petersburg State University, 7/9 Universitetskaya nab, St. Petersburg, 199034, Russia.

出版信息

BMC Evol Biol. 2017 Aug 9;17(1):184. doi: 10.1186/s12862-017-1032-x.

DOI:10.1186/s12862-017-1032-x
PMID:28793855
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5549366/
Abstract

BACKGROUND

Molecular taxonomy studies and barcoding projects can provide rapid means of detecting cryptic diversity. Nevertheless, the use of molecular data for species delimitation should be undertaken with caution. Especially the single-gene approaches are linked with certain pitfalls for taxonomical inference. In the present study, recent and historical species descriptions based upon morphology were used as primary species hypotheses, which were then evaluated with molecular data (including in type and historical museum material) to form secondary species hypotheses. As an example of cryptic diversity and taxonomic controversy, the European Phoxinus phoxinus species complex was used.

RESULTS

The results of the revision showed that of the fourteen primary species hypotheses, three were rejected, namely P. ketmaieri, P. likai, and P. apollonicus. For three species (P. strandjae, P. strymonicus, P. morella), further investigation with increased data sampling was suggested, while two primary hypotheses, P. bigerri and P. colchicus, were supported as secondary species hypotheses. Finally, six of the primary species hypotheses (P. phoxinus, P. lumaireul, P. karsticus, P. septimanae, P. marsilii and P. csikii) were well supported by mitochondrial but only limitedly corroborated by nuclear data analysis.

CONCLUSION

The approach has proven useful for revision of species complexes, and the study can serve as an overview of the Phoxinus genus in Europe, as well as a solid basis for further work.

摘要

背景

分子分类学研究和条形码项目能够提供检测隐秘多样性的快速方法。然而,利用分子数据进行物种界定需谨慎行事。尤其是单基因方法在分类学推断方面存在某些缺陷。在本研究中,基于形态学的近期和历史物种描述被用作主要的物种假设,随后利用分子数据(包括模式标本和历史博物馆标本中的数据)对其进行评估,以形成次要的物种假设。作为隐秘多样性和分类学争议的一个例子,使用了欧洲麦穗鱼物种复合体。

结果

修订结果表明,在14个主要物种假设中,有3个被否定,即凯氏麦穗鱼、利氏麦穗鱼和阿波罗麦穗鱼。对于3个物种(斯特兰贾麦穗鱼、斯特里蒙麦穗鱼、莫雷拉麦穗鱼),建议增加数据采样进行进一步研究,而两个主要假设,即比热里麦穗鱼和科尔基斯麦穗鱼,作为次要物种假设得到了支持。最后,6个主要物种假设(普通麦穗鱼、卢马雷尔麦穗鱼、喀斯特麦穗鱼、塞蒂马奈麦穗鱼、马西利麦穗鱼和奇基麦穗鱼)得到线粒体数据的有力支持,但核数据分析仅提供了有限的佐证。

结论

该方法已被证明对物种复合体的修订有用,本研究可作为欧洲麦穗鱼属的概述,也为进一步的工作奠定了坚实基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2eb0/5549366/47cf9c123a1a/12862_2017_1032_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2eb0/5549366/7239db66dded/12862_2017_1032_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2eb0/5549366/12548b688ddd/12862_2017_1032_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2eb0/5549366/47cf9c123a1a/12862_2017_1032_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2eb0/5549366/7239db66dded/12862_2017_1032_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2eb0/5549366/12548b688ddd/12862_2017_1032_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2eb0/5549366/47cf9c123a1a/12862_2017_1032_Fig3_HTML.jpg

相似文献

1
Contrasting morphology with molecular data: an approach to revision of species complexes based on the example of European Phoxinus (Cyprinidae).形态学与分子数据对比:以欧洲雅罗鱼属(鲤科)为例的物种复合体修订方法
BMC Evol Biol. 2017 Aug 9;17(1):184. doi: 10.1186/s12862-017-1032-x.
2
An integrative approach highlights the discrepancy in the genetic, phenotypic, and presumptive taxonomic structure of Phoxinus (Actinopterygii, Leuciscidae, Phoxininae) in Bulgaria.一种综合方法突出了保加利亚雅罗鱼属(辐鳍鱼纲,鲤科,雅罗鱼亚科)在遗传、表型和推测分类结构上的差异。
J Fish Biol. 2024 Jul;105(1):214-238. doi: 10.1111/jfb.15765. Epub 2024 May 6.
3
A new set of microsatellite markers for Phoxinus lumaireul senso lato, Phoxinus marsilii and Phoxinus krkae for population and molecular taxonomic studies.用于 Phoxinus lumaireul senso lato、Phoxinus marsilii 和 Phoxinus krkae 的一组新的微卫星标记,用于种群和分子分类学研究。
J Fish Biol. 2022 Nov;101(5):1225-1234. doi: 10.1111/jfb.15194. Epub 2022 Aug 29.
4
Description of a new species of Phoxinus from the upper Krka River (Adriatic Basin) in Croatia (Actinopterygii: Leuciscidae), first discovered as a molecular clade.描述一种来自克罗地亚上克瓦河(亚得里亚海盆地)的新的拟鲤属鱼类(硬骨鱼纲:鲤科),最初是作为一个分子进化枝被发现的。
J Fish Biol. 2020 Feb;96(2):378-393. doi: 10.1111/jfb.14210. Epub 2019 Dec 18.
5
European minnows through time: museum collections aid genetic assessment of species introductions in freshwater fishes (Cyprinidae: Phoxinus species complex).欧洲米诺鱼的历史变迁:博物馆藏品助力淡水鱼类(鲤科:米诺鱼物种复合体)物种引入的遗传评估
Heredity (Edinb). 2020 Mar;124(3):410-422. doi: 10.1038/s41437-019-0292-1. Epub 2020 Jan 2.
6
Molecular data suggest a multispecies complex of Phoxinus (Cyprinidae) in the Western Balkan Peninsula.分子数据表明西巴尔干半岛的赤睛鱼属(鲤科)存在一个多物种复合体。
Mol Phylogenet Evol. 2015 Nov;92:118-23. doi: 10.1016/j.ympev.2015.05.024. Epub 2015 Jul 2.
7
Phylogenetic and taxonomic relationships of northern Far Eastern phoxinin minnows, Phoxinus and Rhynchocypris (Pisces, Cyprinidae), as inferred from allozyme and mitochondrial 16S rRNA sequence analyses.基于等位酶和线粒体16S rRNA序列分析推断的远东北部雅罗鱼亚科小鲤科鱼类(雅罗鱼属和突吻鱼属,硬骨鱼纲,鲤科)的系统发育和分类关系
Zoolog Sci. 2006 Apr;23(4):323-31. doi: 10.2108/zsj.23.323.
8
Genetic divergence and phylogenetic independence of Far Eastern species in subfamily Leuciscinae (Pisces: Cyprinidae) inferred from mitochondrial DNA analyses.基于线粒体DNA分析推断鲤科雅罗鱼亚科远东物种的遗传分化和系统发育独立性
Genes Genet Syst. 2007 Aug;82(4):329-40. doi: 10.1266/ggs.82.329.
9
Phoxinus abanticus, a new species from the Lake Abant drainage in Türkiye (Teleostei: Leuciscidae).安纳托利亚鳉,一种来自土耳其阿邦特湖流域的新物种(硬骨鱼纲:鲤科)。
J Fish Biol. 2023 May;102(5):1157-1167. doi: 10.1111/jfb.15371. Epub 2023 Mar 21.
10
Corrigendum to «Contrasting morphology with molecular data: an approach to revision of species complexes based on the example of European (Cyprinidae)» by Palandačić et al. 2017.帕兰达契奇等人于2017年发表的《形态学与分子数据对比:以欧洲鲤科鱼类为例的物种复合体修订方法》勘误
Biodivers Data J. 2017 Oct 24(5):e21772. doi: 10.3897/BDJ.5.e21772. eCollection 2017.

引用本文的文献

1
Factors Beyond Karstification Have Shaped the Population Structure of a Surface-Dwelling Minnow () Able to Disperse Underground.除岩溶作用之外的因素塑造了一种能够在地下扩散的地表生活米诺鱼()的种群结构。
Evol Appl. 2025 May 12;18(5):e70104. doi: 10.1111/eva.70104. eCollection 2025 May.
2
A chromosome-level, haplotype-resolved genome assembly and annotation for the Eurasian minnow (Leuciscidae: Phoxinus phoxinus) provide evidence of haplotype diversity.欧亚米诺鱼(鲤科:湖拟鲤)的染色体水平单倍型解析基因组组装与注释提供了单倍型多样性的证据。
Gigascience. 2025 Jan 6;14. doi: 10.1093/gigascience/giae116.
3
Substygophily in Dinaric Karst: A Model Case of Locally Endemic Minnows (Leuciscinae).

本文引用的文献

1
A comparison of DNA-based methods for delimiting species in a Cretan land snail radiation reveals shortcomings of exclusively molecular taxonomy.对克里特岛陆生蜗牛辐射中用于界定物种的基于DNA的方法进行比较,揭示了单纯分子分类学的不足之处。
Cladistics. 2012 Jun;28(3):300-316. doi: 10.1111/j.1096-0031.2011.00382.x. Epub 2011 Nov 15.
2
Morphological divergence of lake and stream of Northern Italy and the Danube basin based on geometric morphometric analysis.基于几何形态测量分析的意大利北部湖泊与溪流以及多瑙河流域的形态差异
Ecol Evol. 2016 Dec 20;7(2):572-584. doi: 10.1002/ece3.2648. eCollection 2017 Jan.
3
Taxonomic distribution of cryptic diversity among metazoans: not so homogeneous after all.
迪纳拉喀斯特地区的穴居性:当地特有米诺鱼(雅罗鱼亚科)的一个典型案例
Ecol Evol. 2024 Dec 23;14(12):e70648. doi: 10.1002/ece3.70648. eCollection 2024 Dec.
4
Unclear host taxonomy hinders parasite studies: An up-to-date checklist of the protozoan and metazoan parasites of Phoxinus minnows (Teleostei: Leuciscidae).宿主分类不明确阻碍寄生虫研究:麦穗鱼(硬骨鱼纲:鲤科)原生动物和后生动物寄生虫的最新清单。
J Fish Biol. 2024 Dec;105(6):1501-1539. doi: 10.1111/jfb.15894. Epub 2024 Aug 10.
5
An annotated catalogue of selected historical type specimens, including genetic data, housed in the Natural History Museum Vienna.维也纳自然历史博物馆收藏的选定历史模式标本注释目录,包括基因数据。
Zookeys. 2024 May 30;1203:253-323. doi: 10.3897/zookeys.1203.117699. eCollection 2024.
6
Increased spatial resolution of sampling in the Carpathian basin helps to understand the phylogeny of central European stream-dwelling gudgeons.喀尔巴阡盆地采样空间分辨率的提高有助于了解中欧溪流栖息的 gudgeon 的系统发育。
BMC Zool. 2021 Mar 6;6(1):3. doi: 10.1186/s40850-021-00069-7.
7
The Complete Mitochondrial Genome of Eurasian Minnow ( cf. ) from the Heilongjiang River, and Its Phylogenetic Implications.黑龙江欧亚米诺鱼(cf.)的完整线粒体基因组及其系统发育意义。
Animals (Basel). 2022 Oct 27;12(21):2960. doi: 10.3390/ani12212960.
8
The minnow (Leuciscidae) shifts the Adriatic-Black Sea basin divide in the north-western Dinaric Karst region.米诺鱼(鲤科)改变了迪纳拉喀斯特地区西北部亚得里亚海-黑海盆地的分界线。
Ecohydrology. 2022 Sep;15(6):e2449. doi: 10.1002/eco.2449. Epub 2022 Jul 13.
9
A comprehensive DNA barcode inventory of Austria's fish species.奥地利鱼类物种的综合 DNA 条码目录。
PLoS One. 2022 Jun 9;17(6):e0268694. doi: 10.1371/journal.pone.0268694. eCollection 2022.
10
Morphology-Based Identification of Bemisia tabaci Cryptic Species Puparia via Embedded Group-Contrast Convolution Neural Network Analysis.基于形态学的烟粉虱隐种蛹的嵌入式群组对比卷积神经网络分析鉴定。
Syst Biol. 2022 Aug 10;71(5):1095-1109. doi: 10.1093/sysbio/syab098.
后生动物中隐秘多样性的分类分布:终究并非如此均匀。
Biol Lett. 2016 Aug;12(8). doi: 10.1098/rsbl.2016.0371.
4
Gyrodactylus spp. diversity in native and introduced minnow (Phoxinus phoxinus) populations: no support for "the enemy release" hypothesis.本地和引入的米诺鱼(Phoxinus phoxinus)种群中的三代虫属(Gyrodactylus spp.)多样性:不支持“天敌释放”假说
Parasit Vectors. 2016 Jan 28;9:51. doi: 10.1186/s13071-016-1306-y.
5
From barcodes to genomes: extending the concept of DNA barcoding.从条形码到基因组:扩展DNA条形码的概念。
Mol Ecol. 2016 Apr;25(7):1423-8. doi: 10.1111/mec.13549. Epub 2016 Mar 14.
6
Cenozoic tectonic and climatic events in southern Iberian Peninsula: Implications for the evolutionary history of freshwater fish of the genus Squalius (Actinopterygii, Cyprinidae).伊比利亚半岛南部的新生代构造和气候事件:对斯夸利乌斯属(辐鳍鱼纲,鲤科)淡水鱼进化史的影响。
Mol Phylogenet Evol. 2016 Apr;97:155-169. doi: 10.1016/j.ympev.2016.01.007. Epub 2016 Jan 16.
7
Molecular data suggest a multispecies complex of Phoxinus (Cyprinidae) in the Western Balkan Peninsula.分子数据表明西巴尔干半岛的赤睛鱼属(鲤科)存在一个多物种复合体。
Mol Phylogenet Evol. 2015 Nov;92:118-23. doi: 10.1016/j.ympev.2015.05.024. Epub 2015 Jul 2.
8
The use of museum specimens with high-throughput DNA sequencers.博物馆标本与高通量DNA测序仪的联用
J Hum Evol. 2015 Feb;79:35-44. doi: 10.1016/j.jhevol.2014.10.015. Epub 2014 Dec 18.
9
Molecular diversity of Germany's freshwater fishes and lampreys assessed by DNA barcoding.通过 DNA 条形码评估德国淡水鱼类和七鳃鳗的分子多样性。
Mol Ecol Resour. 2015 May;15(3):562-72. doi: 10.1111/1755-0998.12322. Epub 2014 Oct 6.
10
A gateway for phylogenetic analysis powered by grid computing featuring GARLI 2.0.基于网格计算的系统发育分析网关,该系统采用 GARLI 2.0。
Syst Biol. 2014 Sep;63(5):812-8. doi: 10.1093/sysbio/syu031. Epub 2014 Apr 30.