三种β-内酰胺分解代谢土壤菌的基因组序列草图
Draft Genome Sequences of Three β-Lactam-Catabolizing Soil .
作者信息
Crofts Terence S, Wang Bin, Spivak Aaron, Gianoulis Tara A, Forsberg Kevin J, Gibson Molly K, Johnsky Lauren A, Broomall Stacey M, Rosenzweig C Nicole, Skowronski Evan W, Gibbons Henry S, Sommer Morten O A, Dantas Gautam
机构信息
Department of Pathology and Immunology, Washington University in St. Louis, St. Louis, Missouri, USA
Department of Pathology and Immunology, Washington University in St. Louis, St. Louis, Missouri, USA.
出版信息
Genome Announc. 2017 Aug 10;5(32):e00653-17. doi: 10.1128/genomeA.00653-17.
Abstract
Most antibiotics are derived from the soil, but their catabolism there, which is necessary to close the antibiotic carbon cycle, remains uncharacterized. We report the first draft genome sequences of soil identified for subsisting solely on β-lactams as their carbon sources. The genomes encode multiple β-lactamases, although their antibiotic catabolic pathways remain enigmatic.
摘要
大多数抗生素来源于土壤，但其在土壤中的分解代谢（这是闭合抗生素碳循环所必需的）仍未得到充分研究。我们报告了首个仅以β-内酰胺类抗生素作为碳源的土壤微生物的基因组草图序列。这些基因组编码多种β-内酰胺酶，尽管它们的抗生素分解代谢途径仍不明确。
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本文引用的文献
1
Next-generation approaches to understand and combat the antibiotic resistome.理解和对抗抗生素耐药基因组的新一代方法。
Nat Rev Microbiol. 2017 Jul;15(7):422-434. doi: 10.1038/nrmicro.2017.28. Epub 2017 Apr 10.
2
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).SEED 与利用子系统技术进行快速微生物基因组注释（RAST）。
Nucleic Acids Res. 2014 Jan;42(Database issue):D206-14. doi: 10.1093/nar/gkt1226. Epub 2013 Nov 29.
3
Isolation, identification and characterization of human intestinal bacteria with the ability to utilize chloramphenicol as the sole source of carbon and energy.利用氯霉素作为唯一碳源和能源的人肠道细菌的分离、鉴定和特性分析。
FEMS Microbiol Ecol. 2012 Dec;82(3):703-12. doi: 10.1111/j.1574-6941.2012.01440.x. Epub 2012 Jul 30.
4
Identification of multiresistant Salmonella isolates capable of subsisting on antibiotics.鉴定能够在抗生素环境中生存的多重耐药性沙门氏菌。
Appl Environ Microbiol. 2010 Apr;76(8):2678-80. doi: 10.1128/AEM.02516-09. Epub 2010 Feb 19.
5
Bacteria subsisting on antibiotics.依赖抗生素生存的细菌。
Science. 2008 Apr 4;320(5872):100-3. doi: 10.1126/science.1155157.
6
Decomposition of streptomycin.
Science. 1951 Feb 2;113(2927):127.
7
A method for isolating bacteria capable of producing 6-aminopenicillanic acid from benzylpenillin.一种从苄青霉素中分离能够产生6-氨基青霉烷酸的细菌的方法。
Nature. 1961 Sep 9;191:1122-3. doi: 10.1038/1911122a0.
8
Chloramphenicol, a simultaneous carbon and nitrogen source for a Streptomyces sp. from Egyptain soil.
Nature. 1961 Mar 4;189:775-6. doi: 10.1038/189775a0.
9
Response of Pseudomonas cepacia to beta-Lactam antibiotics: utilization of penicillin G as the carbon source.洋葱伯克霍尔德菌对β-内酰胺类抗生素的反应：以青霉素G作为碳源的利用情况。
J Bacteriol. 1979 Dec;140(3):1126-8. doi: 10.1128/jb.140.3.1126-1128.1979.
10
Utilization of benzylpenicillin as carbon, nitrogen and energy source by a Pseudomonas fluorescens strain.荧光假单胞菌菌株对苄青霉素作为碳、氮和能源的利用
Arch Microbiol. 1977 Dec 15;115(3):271-5. doi: 10.1007/BF00446452.
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