分枝杆菌噬菌体Kerberos、Pomar16和StarStuff的基因组序列。
Genome Sequences of Mycobacteriophages Kerberos, Pomar16, and StarStuff.
作者信息
Jacobs-Sera Deborah, Catinas Oana, Fernandez-Martinez Mariceli, Garcia Amelia, Garlena Rebecca A, Guerrero Bustamante Carlos A, Larsen Michelle H, Medellin Rosa H, Melendez-Ortiz Martin Y, Melendez-Rivera Crystal M, Mercado-Andino Alondra K, Mercado-Delgado Abner J, Ortiz-Ortiz Cathia P, Quesada-Gordillo Ana M, Ramos Jacqueline M, Rubin Michael R, Russell Daniel A, Sadana Rachna A, Saha Sanghamitra, Vazquez Edwin, Villarreal David, Hatfull Graham F
机构信息
Department of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Africa Health Research Institute, Durban, South Africa.
出版信息
Genome Announc. 2017 Aug 10;5(32):e00690-17. doi: 10.1128/genomeA.00690-17.
Abstract
We describe the genome sequences of three closely related mycobacteriophages, Kerberos, Pomar16, and StarStuff, isolated at similar times but from geographically distinct regions. All three genomes are similar to those of other subcluster A2 phages, such as L5 and D29, are temperate, and have siphoviral virion morphologies.
摘要
我们描述了三种密切相关的分枝杆菌噬菌体Kerberos、Pomar16和StarStuff的基因组序列，它们在相似的时间分离，但来自地理上不同的区域。所有这三种基因组都与其他A2亚群噬菌体（如L5和D29）的基因组相似，都是温和噬菌体，并且具有长尾病毒粒子形态。
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2
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