Du Yun-Peng, Bi Yu, Zhang Ming-Fang, Yang Feng-Ping, Jia Gui-Xia, Zhang Xiu-Hai
Beijing Agro-Biotechnology Research Center, Beijing Academy of Agriculture and Forestry SciencesBeijing, China.
Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Engineering Technology Research Center of Functional FloricultureBeijing, China.
Front Plant Sci. 2017 Jul 26;8:1303. doi: 10.3389/fpls.2017.01303. eCollection 2017.
Genome size (GS) diversity is of fundamental biological importance. The occurrence of giant genomes in angiosperms is restricted to just a few lineages in the analyzed genome size of plant species so far. It is still an open question whether GS diversity is shaped by neutral or natural selection. The genus , with giant genomes, is phylogenetically and horticulturally important and is distributed throughout the northern hemisphere. GS diversity in and the underlying evolutionary mechanisms are poorly understood. We performed a comprehensive study involving phylogenetically independent analysis on 71 species to explore the diversity and evolution of GS and its correlation with karyological and environmental traits within (including ). The strong phylogenetic signal detected for GS in the genus provides evidence consistent with that the repetitive DNA may be the primary contributors to the GS diversity, while the significant positive relationships detected between GS and the haploid chromosome length (HCL) provide insights into patterns of genome evolution. The relationships between GS and karyotypes indicate that ancestral karyotypes of are likely to have exhibited small genomes, low diversity in centromeric index (CV) values and relatively high relative variation in chromosome length (CV) values. Significant relationships identified between GS and annual temperature and between GS and annual precipitation suggest that adaptation to habitat strongly influences GS diversity. We conclude that GS in is shaped by both neutral (genetic drift) and adaptive evolution. These findings will have important consequences for understanding the evolution of giant plant genomes, and exploring the role of repetitive DNA fraction and chromosome changes in a plant group with large genomes and conservation of chromosome number.
基因组大小(GS)多样性具有重要的生物学意义。在被子植物中,巨型基因组的出现仅限于目前已分析基因组大小的少数植物谱系。GS多样性是由中性因素还是自然选择塑造,仍是一个悬而未决的问题。拥有巨型基因组的[属名]在系统发育和园艺学上具有重要意义,分布于北半球。人们对[属名]的GS多样性及其潜在的进化机制了解甚少。我们进行了一项全面研究,对71个物种进行系统发育独立分析,以探讨[属名](包括[具体物种])内GS的多样性和进化及其与核型和环境特征的相关性。在该属中检测到的GS的强烈系统发育信号提供了证据,表明重复DNA可能是GS多样性的主要贡献者,而GS与单倍体染色体长度(HCL)之间检测到的显著正相关关系为基因组进化模式提供了见解。GS与核型之间的关系表明,[属名]的祖先核型可能具有小基因组、着丝粒指数(CV)值低多样性以及染色体长度(CV)值相对较高的相对变异。GS与年温度和GS与年降水量之间确定的显著关系表明,对栖息地的适应强烈影响GS多样性。我们得出结论,[属名]的GS是由中性(遗传漂变)和适应性进化共同塑造的。这些发现对于理解巨型植物基因组的进化、探索重复DNA片段和染色体变化在一个具有大基因组和染色体数保守的植物类群中的作用具有重要意义。