Chaudhary Dhiraj Kumar, Kim Jaisoo
Department of Life Science, College of Natural Sciences, Kyonggi University, Suwon, Gyeonggi-Do 16227, Republic of Korea.
Int J Syst Evol Microbiol. 2017 Aug;67(8):2696-2703. doi: 10.1099/ijsem.0.002002. Epub 2017 Aug 15.
A light yellow-coloured, Gram-stain-negative, motile and rod-shaped bacterium, designated strain K-3-1T, was isolated from reclaimed grassland soils of Belbari, Morang, Nepal. It was able to grow at 4-45 °C, at pH 5.0-10.0, and at 0-2 % (w/v) NaCl concentrations. This strain was taxonomically characterized by a polyphasic approach. Based on the 16S rRNA gene sequence analysis, strain K-3-1T belongs to the genus Massilia and is closely related to Massilia consociata CCUG 58010T (98.3 % sequence similarity), Massilia tieshanensis TS3T (98.1 % sequence similarity), Massilia kyonggiensis TSA1T (98.1 % sequence similarity), Massilia yuzhufengensisY1243-1T (98.1 % sequence similarity), Massilia haematophila CCUG 38318T (98.0 % sequence similarity), Massilia varians CCUG 35299T (97.9 % sequence similarity), Massilia niastensis 5516 S-1T (97.6 % sequence similarity) and Massilia alkalitolerans YIM 31775T (97.5 % sequence similarity). The predominant respiratory quinone was ubiquinone-8. The polar lipid profile revealed the presence of phosphatidylethanolamine, phosphatidylglycerol and diphosphatidylglycerol. The predominant fatty acids of strain K-3-1T were summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), C16 : 0, C12 : 0, C10 : 0 3-OH and summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c). The genomic DNA G+C content of this novel strain was 66.8 mol%. The DNA-DNA relatedness between strain K-3-1T and its closest reference strains were significantly lower than the threshold value of 70 %. The morphological, physiological, chemotaxonomic and phylogenetic analyses clearly distinguished this strain from its closest phylogenetic neighbours. Thus, strain K-3-1T represents a novel species of the genus Massilia, for which the name Massilia agri sp. nov. is proposed. The type strain is K-3-1T (=KEMB 9005-446T=KACC 19000T=JCM 31661T).
从尼泊尔莫朗贝尔巴里的开垦草地土壤中分离出一株浅黄色、革兰氏染色阴性、具运动性的杆状细菌,命名为菌株K-3-1T。它能够在4-45 °C、pH 5.0-10.0以及0-2 %(w/v)NaCl浓度下生长。采用多相分类法对该菌株进行分类学特征分析。基于16S rRNA基因序列分析,菌株K-3-1T属于马赛菌属,与共生马赛菌CCUG 58010T(序列相似性为98.3 %)、铁山马赛菌TS3T(序列相似性为98.1 %)、京畿马赛菌TSA1T(序列相似性为98.1 %)、玉珠峰马赛菌Y1243-1T(序列相似性为98.1 %)、嗜血红素马赛菌CCUG 38318T(序列相似性为98.0 %)、多变马赛菌CCUG 35299T(序列相似性为97.9 %)、尼亚斯马赛菌5516 S-1T(序列相似性为97.6 %)和耐碱马赛菌YIM 31775T(序列相似性为97.5 %)密切相关。主要呼吸醌为泛醌-8。极性脂质谱显示存在磷脂酰乙醇胺、磷脂酰甘油和双磷脂酰甘油。菌株K-3-1T的主要脂肪酸为总和特征3(C16 : 1ω7c和/或C16 : 1ω6c)、C16 : 0、C12 : 0、C10 : 0 3-OH和总和特征8(C18 : 1ω7c和/或C18 : 1ω6c)。该新菌株的基因组DNA G+C含量为66.8 mol%。菌株K-3-1T与其最接近的参考菌株之间的DNA-DNA相关性显著低于70 %的阈值。形态学、生理学、化学分类学和系统发育分析清楚地将该菌株与其最接近的系统发育邻居区分开来。因此,菌株K-3-1T代表马赛菌属的一个新物种,为此提出名称马赛农杆菌新种。模式菌株为K-3-1T(=KEMB 9005-446T=KACC 19000T=JCM 31661T)。