日本蛋白质数据银行（PDBj）数据输出活动中的新工具和功能。
New tools and functions in data-out activities at Protein Data Bank Japan (PDBj).
作者信息
Kinjo Akira R, Bekker Gert-Jan, Wako Hiroshi, Endo Shigeru, Tsuchiya Yuko, Sato Hiromu, Nishi Hafumi, Kinoshita Kengo, Suzuki Hirofumi, Kawabata Takeshi, Yokochi Masashi, Iwata Takeshi, Kobayashi Naohiro, Fujiwara Toshimichi, Kurisu Genji, Nakamura Haruki
机构信息
Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan.
School of Social Sciences, Waseda University, 1-6-1 Nishi-Waseda, Shinjuku-ku, Tokyo, 169-8050, Japan.
出版信息
Protein Sci. 2018 Jan;27(1):95-102. doi: 10.1002/pro.3273. Epub 2017 Sep 18.
The Protein Data Bank Japan (PDBj), a member of the worldwide Protein Data Bank (wwPDB), accepts and processes the deposited data of experimentally determined biological macromolecular structures. In addition to archiving the PDB data in collaboration with the other wwPDB partners, PDBj also provides a wide range of original and unique services and tools, which are continuously improved and updated. Here, we report the new RDB PDBj Mine 2, the WebGL molecular viewer Molmil, the ProMode-Elastic server for normal mode analysis, a virtual reality system for the eF-site protein electrostatic molecular surfaces, the extensions of the Omokage search for molecular shape similarity, and the integration of PDBj and BMRB searches.
日本蛋白质数据库（PDBj）是全球蛋白质数据库（wwPDB）的成员之一，接收并处理通过实验确定的生物大分子结构的 deposited 数据。除了与其他 wwPDB 合作伙伴合作存档 PDB 数据外，PDBj 还提供广泛的原创和独特服务及工具，并不断改进和更新。在此，我们报告了新的 RDB PDBj Mine 2、WebGL 分子查看器 Molmil、用于正常模式分析的 ProMode-Elastic 服务器、用于 eF 位点蛋白质静电分子表面的虚拟现实系统、Omokage 分子形状相似性搜索的扩展以及 PDBj 和 BMRB 搜索的整合。
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