Velankar Sameer, van Ginkel Glen, Alhroub Younes, Battle Gary M, Berrisford John M, Conroy Matthew J, Dana Jose M, Gore Swanand P, Gutmanas Aleksandras, Haslam Pauline, Hendrickx Pieter M S, Lagerstedt Ingvar, Mir Saqib, Fernandez Montecelo Manuel A, Mukhopadhyay Abhik, Oldfield Thomas J, Patwardhan Ardan, Sanz-García Eduardo, Sen Sanchayita, Slowley Robert A, Wainwright Michael E, Deshpande Mandar S, Iudin Andrii, Sahni Gaurav, Salavert Torres Jose, Hirshberg Miriam, Mak Lora, Nadzirin Nurul, Armstrong David R, Clark Alice R, Smart Oliver S, Korir Paul K, Kleywegt Gerard J
Protein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
Protein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
Nucleic Acids Res. 2016 Jan 4;44(D1):D385-95. doi: 10.1093/nar/gkv1047. Epub 2015 Oct 17.
The Protein Data Bank in Europe (http://pdbe.org) accepts and annotates depositions of macromolecular structure data in the PDB and EMDB archives and enriches, integrates and disseminates structural information in a variety of ways. The PDBe website has been redesigned based on an analysis of user requirements, and now offers intuitive access to improved and value-added macromolecular structure information. Unique value-added information includes lists of reviews and research articles that cite or mention PDB entries as well as access to figures and legends from full-text open-access publications that describe PDB entries. A powerful new query system not only shows all the PDB entries that match a given query, but also shows the 'best structures' for a given macromolecule, ligand complex or sequence family using data-quality information from the wwPDB validation reports. A PDBe RESTful API has been developed to provide unified access to macromolecular structure data available in the PDB and EMDB archives as well as value-added annotations, e.g. regarding structure quality and up-to-date cross-reference information from the SIFTS resource. Taken together, these new developments facilitate unified access to macromolecular structure data in an intuitive way for non-expert users and support expert users in analysing macromolecular structure data.
欧洲蛋白质数据库（http://pdbe.org）接受并注释蛋白质数据库（PDB）和电子显微镜数据库（EMDB）档案库中的大分子结构数据，并以多种方式丰富、整合和传播结构信息。基于对用户需求的分析，PDBe网站进行了重新设计，现在能够直观地提供经过改进的、增值的大分子结构信息。独特的增值信息包括引用或提及PDB条目的综述和研究文章列表，以及获取描述PDB条目的全文开放获取出版物中的图表和说明。一个强大的新查询系统不仅能显示与给定查询匹配的所有PDB条目，还能利用世界蛋白质数据库（wwPDB）验证报告中的数据质量信息，显示给定大分子、配体复合物或序列家族的“最佳结构”。已开发出一个PDBe RESTful应用程序编程接口，以统一访问PDB和EMDB档案库中可用的大分子结构数据以及增值注释，例如关于结构质量和来自SIFTS资源的最新交叉引用信息。总之，这些新进展便于非专业用户以直观的方式统一访问大分子结构数据，并支持专业用户分析大分子结构数据。
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