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HLA - C基因座的限制性片段长度多态性

Restriction fragment length polymorphism at the HLA-C locus.

作者信息

Smeaton I, Summers C W, Harris R, Strachan T

出版信息

Immunogenetics. 1987;25(3):179-83. doi: 10.1007/BF00344032.

DOI:10.1007/BF00344032
PMID:2881885
Abstract

We have used the HLA-C-specific DNA probe pC250 to investigate restriction fragment length polymorphism (RFLP) at the HLA-C locus. Genomic Southern blot hybridization included DNA prepared from a panel of homozygous typing cells representing serological specificities Cw1 to Cw8 and also from samples representing Cw blanks. Although many restriction nucleases failed to reveal any polymorphism, RFLPs were evident with Taq I, Pvu II, Bst XI, Nde I, and Nci I in addition to the previously reported Eco RI. In the case of Bst XI, a unique RFLP defined a subset of serologically defined Cw blanks. Comparison of RFLP sizes with restriction fragment lengths obtained from the known HLA-Cw3 gene sequence permitted the localization of intragenic C locus RFLPs and the identification of a variable Taq I site in the second intron, a variable Nci I site near the end of the fourth exon, and a variable Pvu II site in the fifth intron.

摘要

我们使用了HLA - C特异性DNA探针pC250来研究HLA - C位点的限制性片段长度多态性(RFLP)。基因组Southern印迹杂交使用的DNA,一部分来自代表血清学特异性Cw1至Cw8的纯合分型细胞系,另一部分来自代表Cw空白的样本。尽管许多限制性核酸酶未能揭示任何多态性,但除了先前报道的Eco RI外,Taq I、Pvu II、Bst XI、Nde I和Nci I也显示出明显的RFLP。就Bst XI而言,一种独特的RFLP定义了血清学定义的Cw空白的一个子集。将RFLP大小与从已知HLA - Cw3基因序列获得的限制性片段长度进行比较,从而确定了基因内C位点RFLP的定位,并鉴定出第二个内含子中的一个可变Taq I位点、第四个外显子末端附近的一个可变Nci I位点以及第五个内含子中的一个可变Pvu II位点。

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引用本文的文献

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本文引用的文献

1
The evolution of class I MHC genes.I类主要组织相容性复合体基因的进化
Immunol Today. 1986 Feb;7(2):41-4. doi: 10.1016/0167-5699(86)90123-4.
2
Complete nucleotide sequence of a gene encoding a functional human class I histocompatibility antigen (HLA-CW3).编码功能性人类I类组织相容性抗原(HLA - CW3)的基因的完整核苷酸序列。
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Isolation of HLA locus-specific DNA probes from the 3'-untranslated region.从3'非翻译区分离HLA基因座特异性DNA探针。
Proc Natl Acad Sci U S A. 1984 Aug;81(16):5175-8. doi: 10.1073/pnas.81.16.5175.
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Molecular organization of the class I genes of human major histocompatibility complex.人类主要组织相容性复合体 I 类基因的分子组织
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An HLA-C-specific DNA probe.一种HLA - C特异性DNA探针。
Immunogenetics. 1986;23(2):115-20. doi: 10.1007/BF00377971.
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Use of DNA probes from the 5' flanking region of the HLA-B gene to examine polymorphism at the HLA-B locus.
Hum Immunol. 1986 Jun;16(2):137-47. doi: 10.1016/0198-8859(86)90042-x.
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HLA-JY328: mapping studies and expression of a polymorphic HLA class I gene.HLA-JY328:一个多态性HLA I类基因的定位研究与表达
Immunogenetics. 1986;23(2):90-9. doi: 10.1007/BF00377967.
9
HLA-B locus polymorphism: studies with a specific hybridization probe.HLA - B 基因座多态性:使用特异性杂交探针的研究
Proc Natl Acad Sci U S A. 1985 Dec;82(24):8614-8. doi: 10.1073/pnas.82.24.8614.