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Myticalins:来自海洋贻贝(Mytilus spp.)的新型线性阳离子抗菌肽的多基因家族。

Myticalins: A Novel Multigenic Family of Linear, Cationic Antimicrobial Peptides from Marine Mussels (Mytilus spp.).

机构信息

Scuola Internazionale Superiore di Studi Avanzati, via Bonomea 265, Trieste 34136, Italy.

Department of Life Sciences, University of Trieste, Via Giorgieri 5, Trieste 34127, Italy.

出版信息

Mar Drugs. 2017 Aug 22;15(8):261. doi: 10.3390/md15080261.

Abstract

The application of high-throughput sequencing technologies to non-model organisms has brought new opportunities for the identification of bioactive peptides from genomes and transcriptomes. From this point of view, marine invertebrates represent a potentially rich, yet largely unexplored resource for discovery due to their adaptation to diverse challenging habitats. Bioinformatics analyses of available genomic and transcriptomic data allowed us to identify myticalins, a novel family of antimicrobial peptides (AMPs) from the mussel , and a similar family of AMPs from spp., named modiocalins. Their coding sequence encompasses two conserved N-terminal (signal peptide) and C-terminal (propeptide) regions and a hypervariable central cationic region corresponding to the mature peptide. Myticalins are taxonomically restricted to Mytiloida and they can be classified into four subfamilies. These AMPs are subject to considerable interindividual sequence variability and possibly to presence/absence variation. Functional assays performed on selected members of this family indicate a remarkable tissue-specific expression (in gills) and broad spectrum of activity against both Gram-positive and Gram-negative bacteria. Overall, we present the first linear AMPs ever described in marine mussels and confirm the great potential of bioinformatics tools for the discovery of bioactive peptides in non-model organisms.

摘要

高通量测序技术在非模式生物中的应用为从基因组和转录组中鉴定生物活性肽带来了新的机遇。从这个角度来看,海洋无脊椎动物因其适应多样化的挑战性生境而代表了一个潜在的丰富但尚未充分开发的资源。对现有基因组和转录组数据的生物信息学分析使我们能够从贻贝中鉴定出新的抗菌肽(AMPs)家族 myticalin,以及一种来自 spp. 的类似 AMP 家族,命名为 modiocalin。它们的编码序列包含两个保守的 N 端(信号肽)和 C 端(前肽)区域和一个对应成熟肽的超变阳离子区域。Myticalin 仅局限于贻贝类,可分为四个亚家族。这些 AMP 受到个体间序列变异的显著影响,并且可能存在/不存在变异。对该家族中选定成员进行的功能分析表明,它们具有显著的组织特异性表达(在鳃中)和对革兰氏阳性和革兰氏阴性细菌的广谱活性。总的来说,我们首次在海洋贻贝中描述了线性 AMP,并证实了生物信息学工具在非模式生物中发现生物活性肽的巨大潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d089/5577615/23141794e071/marinedrugs-15-00261-g003.jpg

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