Crimmins Theresa M, Crimmins Michael A, Gerst Katharine L, Rosemartin Alyssa H, Weltzin Jake F
National Coordinating Office, USA National Phenology Network, Tucson, Arizona, United States of America.
School of Natural Resources and the Environment, University of Arizona, Tucson, Arizona, United States of America.
PLoS One. 2017 Aug 22;12(8):e0182919. doi: 10.1371/journal.pone.0182919. eCollection 2017.
In support of science and society, the USA National Phenology Network (USA-NPN) maintains a rapidly growing, continental-scale, species-rich dataset of plant and animal phenology observations that with over 10 million records is the largest such database in the United States. The aim of this study was to explore the potential that exists in the broad and rich volunteer-collected dataset maintained by the USA-NPN for constructing models predicting the timing of phenological transition across species' ranges within the continental United States. Contributed voluntarily by professional and citizen scientists, these opportunistically collected observations are characterized by spatial clustering, inconsistent spatial and temporal sampling, and short temporal depth (2009-present). Whether data exhibiting such limitations can be used to develop predictive models appropriate for use across large geographic regions has not yet been explored.
We constructed predictive models for phenophases that are the most abundant in the database and also relevant to management applications for all species with available data, regardless of plant growth habit, location, geographic extent, or temporal depth of the observations. We implemented a very basic model formulation-thermal time models with a fixed start date.
Sufficient data were available to construct 107 individual species × phenophase models. Remarkably, given the limited temporal depth of this dataset and the simple modeling approach used, fifteen of these models (14%) met our criteria for model fit and error. The majority of these models represented the "breaking leaf buds" and "leaves" phenophases and represented shrub or tree growth forms. Accumulated growing degree day (GDD) thresholds that emerged ranged from 454 GDDs (Amelanchier canadensis-breaking leaf buds) to 1,300 GDDs (Prunus serotina-open flowers). Such candidate thermal time thresholds can be used to produce real-time and short-term forecast maps of the timing of these phenophase transition. In addition, many of the candidate models that emerged were suitable for use across the majority of the species' geographic ranges. Real-time and forecast maps of phenophase transitions could support a wide range of natural resource management applications, including invasive plant management, issuing asthma and allergy alerts, and anticipating frost damage for crops in vulnerable states.
Our finding that several viable thermal time threshold models that work across the majority of the species ranges could be constructed from the USA-NPN database provides clear evidence that great potential exists this dataset to develop more enhanced predictive models for additional species and phenophases. Further, the candidate models that emerged have immediate utility for supporting a wide range of management applications.
为了支持科学和社会发展,美国国家物候学网络(USA-NPN)维护着一个快速增长的、覆盖整个大陆范围且物种丰富的动植物物候观测数据集,该数据集拥有超过1000万条记录,是美国最大的此类数据库。本研究的目的是探索USA-NPN维护的广泛且丰富的志愿者收集数据集在构建预测美国大陆范围内物种物候转变时间模型方面存在的潜力。这些机会性收集的观测数据由专业科学家和公民科学家自愿提供,其特点是空间聚类、空间和时间采样不一致以及时间深度较短(2009年至今)。尚未探讨具有此类局限性的数据是否可用于开发适用于大地理区域的预测模型。
对于数据库中最丰富且与所有有可用数据的物种管理应用相关的物候阶段,无论植物生长习性、位置、地理范围或观测的时间深度如何,我们构建了预测模型。我们实施了一种非常基本的模型公式——具有固定起始日期的热时间模型。
有足够的数据来构建107个单个物种×物候阶段模型。值得注意的是,鉴于该数据集的时间深度有限以及所使用的简单建模方法,其中15个模型(14%)符合我们的模型拟合和误差标准。这些模型中的大多数代表“叶芽萌发”和“叶片”物候阶段,且代表灌木或树木生长形式。出现的累积生长度日(GDD)阈值范围从454生长度日(加拿大唐棣——叶芽萌发)到1300生长度日(黑樱桃——开花)。此类候选热时间阈值可用于生成这些物候阶段转变时间的实时和短期预测地图。此外,出现的许多候选模型适用于大多数物种的地理范围。物候阶段转变的实时和预测地图可支持广泛的自然资源管理应用,包括入侵植物管理、发布哮喘和过敏警报以及预测脆弱状态下作物的霜冻损害。
我们的研究发现,从USA-NPN数据库中可以构建出几个适用于大多数物种范围的可行热时间阈值模型,这清楚地证明了该数据集在为更多物种和物候阶段开发更强大的预测模型方面具有巨大潜力。此外,出现的候选模型对于支持广泛的管理应用具有直接效用。