Wesolowski Amy, Buckee Caroline O, Engø-Monsen Kenth, Metcalf C J E
Department of Epidemiology.
Center for Communicable Disease Dynamics, Harvard T. H. Chan School of Public Health, Boston, Massachusetts.
J Infect Dis. 2016 Dec 1;214(suppl_4):S414-S420. doi: 10.1093/infdis/jiw273.
Human travel can shape infectious disease dynamics by introducing pathogens into susceptible populations or by changing the frequency of contacts between infected and susceptible individuals. Quantifying infectious disease-relevant travel patterns on fine spatial and temporal scales has historically been limited by data availability. The recent emergence of mobile phone calling data and associated locational information means that we can now trace fine scale movement across large numbers of individuals. However, these data necessarily reflect a biased sample of individuals across communities and are generally aggregated for both ethical and pragmatic reasons that may further obscure the nuance of individual and spatial heterogeneities. Additionally, as a general rule, the mobile phone data are not linked to demographic or social identifiers, or to information about the disease status of individual subscribers (although these may be made available in smaller-scale specific cases). Combining data on human movement from mobile phone data-derived population fluxes with data on disease incidence requires approaches that can tackle varying spatial and temporal resolutions of each data source and generate inference about dynamics on scales relevant to both pathogen biology and human ecology. Here, we review the opportunities and challenges of these novel data streams, illustrating our examples with analyses of 2 different pathogens in Kenya, and conclude by outlining core directions for future research.
人类旅行可通过将病原体引入易感人群或改变感染者与易感者之间的接触频率来塑造传染病动态。在精细的空间和时间尺度上量化与传染病相关的旅行模式,历来受到数据可用性的限制。手机通话数据及相关位置信息的近期出现,意味着我们现在能够追踪大量个体的精细尺度移动。然而,这些数据必然反映了不同社区个体的偏差样本,并且出于伦理和实际原因通常是汇总的,这可能会进一步掩盖个体和空间异质性的细微差别。此外,一般而言,手机数据未与人口统计学或社会标识符相关联,也未与个体用户的疾病状态信息相关联(尽管在较小规模的特定案例中可能会提供这些信息)。将源自手机数据的人口流动数据中的人类移动数据与疾病发病率数据相结合,需要能够处理每个数据源不同空间和时间分辨率并在与病原体生物学和人类生态学相关的尺度上生成动态推断的方法。在此,我们回顾这些新型数据流带来的机遇与挑战,通过对肯尼亚两种不同病原体的分析举例说明,并通过概述未来研究的核心方向得出结论。