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用 GROMOS 兼容的 2016H66 力场模拟非离子表面活性剂双层。

Simulating Bilayers of Nonionic Surfactants with the GROMOS-Compatible 2016H66 Force Field.

机构信息

Sorbonne Universités, UPMC Univ Paris 06, CNRS, INSERM, Laboratoire d'Imagerie Biomédicale , F-75006 Paris, France.

Laboratoire de Physique Statistique, École Normale Supérieure, PSL Research University; Université Paris Diderot, Sorbonne Paris-Cité; Sorbonne Universités UPMC Univ Paris 06, CNRS , 24 rue Lhomond, 75005 Paris, France.

出版信息

Langmuir. 2017 Oct 3;33(39):10225-10238. doi: 10.1021/acs.langmuir.7b01348. Epub 2017 Sep 20.

DOI:10.1021/acs.langmuir.7b01348
PMID:28832154
Abstract

Polyoxyethylene glycol alkyl ether amphiphiles (CE) are important nonionic surfactants, often used for biophysical and membrane protein studies. In this work, we extensively test the GROMOS-compatible 2016H66 force field in molecular dynamics simulations involving the lamellar phase of a series of CE surfactants, namely CE, CE, CE, CE, and CE. The simulations reproduce qualitatively well the monitored structural properties and their experimental trends along the surfactant series, although some discrepancies remain, in particular in terms of the area per surfactant, the equilibrium phase of CE, and the order parameters of CE, CE, and CE. The polar head of the CE surfactants is highly hydrated, almost like a single polyethyleneoxide (PEO) molecule at full hydration, resulting in very compact conformations. Within the bilayer, all CE surfactants flip-flop spontaneously within tens of nanoseconds. Water-permeation is facilitated, and the bending rigidity is 4 to 5 times lower than that of typical phospholipid bilayers. In line with another recent theoretical study, the simulations show that the lamellar phase of CE contains large hydrophilic pores. These pores should be abundant in order to reproduce the comparatively low NMR order parameters. We show that their contour length is directly correlated to the order parameters, and we estimate that they should occupy approximately 7-10% of the total membrane area. Due to their highly dynamic nature (rapid flip-flops, high water permeability, observed pore formation), CE surfactant bilayers are found to represent surprisingly challenging systems in terms of modeling. Given this difficulty, the results presented here show that the 2016H66 parameters, optimized independently considering pure-liquid as well as polar and nonpolar solvation properties of small organic molecules, represent a good starting point for simulating these systems.

摘要

聚氧乙烯烷基醚两亲物(CE)是重要的非离子表面活性剂,常用于生物物理和膜蛋白研究。在这项工作中,我们在涉及一系列 CE 表面活性剂的层状相的分子动力学模拟中广泛测试了与 GROMOS 兼容的 2016H66 力场。模拟很好地再现了监测到的结构特性及其沿表面活性剂系列的实验趋势,尽管存在一些差异,特别是在表面活性剂的面积、CE 的平衡相和 CE、CE 和 CE 的序参数方面。CE 表面活性剂的极性头高度水合,几乎像完全水合时的单个聚环氧乙烷(PEO)分子一样,导致非常紧凑的构象。在双层内,所有 CE 表面活性剂在数十纳秒内自发翻转。水渗透得到促进,弯曲刚度比典型的磷脂双层低 4 到 5 倍。与另一项最近的理论研究一致,模拟表明 CE 的层状相包含大的亲水性孔。为了重现相对较低的 NMR 序参数,应该有大量的这些孔。我们表明,它们的轮廓长度与序参数直接相关,我们估计它们应该占据总膜面积的 7-10%左右。由于其高度动态的性质(快速翻转、高水渗透性、观察到的孔形成),CE 表面活性剂双层在建模方面被认为是具有挑战性的系统。考虑到这种困难,这里呈现的结果表明,2016H66 参数,独立优化考虑小分子的纯液体以及极性和非极性溶剂化性质,是模拟这些系统的一个很好的起点。

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