Oanca Gabriel, Stare Jernej, Mavri Janez
Department of Computational Biochemistry and Drug Design, National Institute of Chemistry, Ljubljana, Slovenia.
Faculty of Physics, Alexandru Ioan Cuza University of Iasi, Iasi, Romania.
Proteins. 2017 Dec;85(12):2170-2178. doi: 10.1002/prot.25374. Epub 2017 Sep 1.
This work scrutinizes kinetics of decomposition of adrenaline catalyzed by monoamine oxidase (MAO) A and B enzymes, a process controlling the levels of adrenaline in the central nervous system and other tissues. Experimental kinetic data for MAO A and B catalyzed decomposition of adrenaline are reported only in the form of the maximum reaction rate. Therefore, we estimated the experimental free energy barriers form the kinetic data of closely related systems using regression method, as was done in our previous study. By using multiscale simulation on the Empirical Valence Bond (EVB) level, we studied the chemical reactivity of the MAO A catalyzed decomposition of adrenaline and we obtained a value of activation free energy of 17.3 ± 0.4 kcal/mol. The corresponding value for MAO B is 15.7 ± 0.7 kcal/mol. Both values are in good agreement with the estimated experimental barriers of 16.6 and 16.0 kcal/mol for MAO A and MAO B, respectively. The fact that we reproduced the kinetic data and preferential catalytic effect of MAO B over MAO A gives additional support to the validity of the proposed hydride transfer mechanism. Furthermore, we demonstrate that adrenaline is preferably involved in the reaction in a neutral rather than in a protonated form due to considerably higher barriers computed for the protonated adrenaline substrate. The results are discussed in the context of chemical mechanism of MAO enzymes and possible applications of multiscale simulation to rationalize the effects of MAO activity on adrenaline level.
这项工作仔细研究了单胺氧化酶(MAO)A和B催化肾上腺素分解的动力学,这一过程控制着中枢神经系统和其他组织中肾上腺素的水平。MAO A和B催化肾上腺素分解的实验动力学数据仅以最大反应速率的形式报道。因此,我们像之前的研究那样,使用回归方法从密切相关系统的动力学数据中估算了实验自由能垒。通过在经验价键(EVB)水平上进行多尺度模拟,我们研究了MAO A催化肾上腺素分解的化学反应性,得到的活化自由能值为17.3±0.4千卡/摩尔。MAO B的相应值为15.7±0.7千卡/摩尔。这两个值与分别估算的MAO A和MAO B的实验能垒16.6和16.0千卡/摩尔非常吻合。我们重现了动力学数据以及MAO B相对于MAO A的优先催化作用,这一事实为所提出的氢化物转移机制的有效性提供了额外支持。此外,我们证明,由于计算出质子化肾上腺素底物的能垒要高得多,肾上腺素在反应中更倾向于以中性而非质子化形式参与。我们将在MAO酶的化学机制以及多尺度模拟在合理化MAO活性对肾上腺素水平影响方面的可能应用的背景下讨论这些结果