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Cardiomyocyte Lineage Specification in Adult Human Cardiac Precursor Cells Via Modulation of Enhancer-Associated Long Noncoding RNA Expression.通过调节增强子相关长链非编码RNA表达实现成人心脏前体细胞中的心肌细胞谱系特化
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Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation.Ensembl核心软件资源:用于DNA序列和基因组注释的存储及编程访问。
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Super-Enhancer-Mediated RNA Processing Revealed by Integrative MicroRNA Network Analysis.整合性微小RNA网络分析揭示的超级增强子介导的RNA加工
Cell. 2017 Mar 9;168(6):1000-1014.e15. doi: 10.1016/j.cell.2017.02.015.
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Extensive translation of circular RNAs driven by N-methyladenosine.由N-甲基腺苷驱动的环状RNA的广泛翻译。
Cell Res. 2017 May;27(5):626-641. doi: 10.1038/cr.2017.31. Epub 2017 Mar 10.
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Novel players in X inactivation: insights into Xist-mediated gene silencing and chromosome conformation.新型 X 染色体失活调控因子:Xist 介导的基因沉默与染色体构象。
Nat Struct Mol Biol. 2017 Mar 3;24(3):197-204. doi: 10.1038/nsmb.3370.
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cis-Acting Complex-Trait-Associated lincRNA Expression Correlates with Modulation of Chromosomal Architecture.顺式作用的复杂性状相关长链非编码RNA表达与染色体结构的调控相关。
Cell Rep. 2017 Feb 28;18(9):2280-2288. doi: 10.1016/j.celrep.2017.02.009.
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An atlas of human long non-coding RNAs with accurate 5' ends.具有精确5'端的人类长链非编码RNA图谱。
Nature. 2017 Mar 9;543(7644):199-204. doi: 10.1038/nature21374. Epub 2017 Mar 1.
9
CCG: an integrative resource of cancer protein-coding genes and long noncoding RNAs.CCG:癌症蛋白质编码基因和长链非编码RNA的综合资源。
Discov Med. 2016 Dec;22(123):351-359.
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Xist-dependent imprinted X inactivation and the early developmental consequences of its failure.Xist 依赖的印记 X 染色体失活及其失败的早期发育后果。
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短链和长链非编码 RNA 调节细胞的表观遗传状态。

Short and Long Noncoding RNAs Regulate the Epigenetic Status of Cells.

机构信息

1 Cardiovascular Innovation Institute, University of Louisville , Louisville, Kentucky.

2 Institute of Molecular Cardiology, University of Louisville , Louisville, Kentucky.

出版信息

Antioxid Redox Signal. 2018 Sep 20;29(9):832-845. doi: 10.1089/ars.2017.7262. Epub 2017 Sep 28.

DOI:10.1089/ars.2017.7262
PMID:28847161
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6080105/
Abstract

SIGNIFICANCE

The concepts of junk DNA and transcriptional noise are long gone as the existence of noncoding RNAs (ncRNAs) has been tested extensively in recent years. Given that the epigenetic status of cells affects many biological processes, how ncRNAs mechanistically contribute to these processes is of great interest. Recent Advances: Recent studies show that various ncRNAs interact with epigenetic and/or transcription factors to modulate the epigenetic status of cells directly and/or indirectly. There exists growing interest in the field of cardiovascular research to understand the roles of ncRNAs. Due to the large number of ncRNAs in the mammalian genome, only a handful of ncRNAs have been functionally elucidated, which makes it difficult to understand how ncRNAs interact with protein-coding genes and their encoded proteins.

CRITICAL ISSUES

Although the canonical function of microRNAs (miRNAs) to inhibit the translation of protein-coding genes is well established, the number of functionally annotated long noncoding RNAs (lncRNAs) is still small, which is especially true in the heart.

FUTURE DIRECTIONS

Future studies must connect the epigenetic controls of various cellular phenomena by incorporating both miRNAs and lncRNAs. Antioxid. Redox Signal. 29, 832-845.

摘要

意义

近年来,随着非编码 RNA(ncRNA)的广泛研究, junk DNA 和转录噪声的概念早已不复存在。鉴于细胞的表观遗传状态会影响许多生物过程,ncRNA 如何在这些过程中发挥作用引起了极大的兴趣。

最新进展

最近的研究表明,各种 ncRNA 与表观遗传和/或转录因子相互作用,直接和/或间接调节细胞的表观遗传状态。在心血管研究领域,人们越来越感兴趣的是理解 ncRNA 的作用。由于哺乳动物基因组中有大量的 ncRNA,只有少数 ncRNA 的功能得到了阐明,这使得人们难以理解 ncRNA 如何与蛋白质编码基因及其编码的蛋白质相互作用。

关键问题

尽管 microRNAs(miRNAs)抑制蛋白质编码基因翻译的典型功能已经得到很好的确立,但具有功能注释的长非编码 RNA(lncRNA)的数量仍然很少,在心脏中尤其如此。

未来方向

未来的研究必须通过整合 miRNA 和 lncRNA,将各种细胞现象的表观遗传控制联系起来。抗氧化。氧化还原信号。29, 832-845.