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Roles for Non-coding RNAs in Spatial Genome Organization.非编码RNA在空间基因组组织中的作用。
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Epigenetic modifications of histones in cancer.癌症中组蛋白的表观遗传修饰。
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MOWChIP-seq for low-input and multiplexed profiling of genome-wide histone modifications.微量样本 MOWChIP-seq 测序技术可用于低投入、多重检测的全基因组组蛋白修饰谱分析。
Nat Protoc. 2019 Dec;14(12):3366-3394. doi: 10.1038/s41596-019-0223-x. Epub 2019 Oct 30.
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Epigenetic subtyping of white blood cells using a thermoplastic elastomer-based microfluidic emulsification device for multiplexed, methylation-specific digital droplet PCR.使用基于热塑性弹性体的微流控乳化装置对白细胞进行表观遗传亚型分类,用于多重、甲基化特异性数字液滴 PCR。
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The diverse roles of DNA methylation in mammalian development and disease.DNA 甲基化在哺乳动物发育和疾病中的多种作用。
Nat Rev Mol Cell Biol. 2019 Oct;20(10):590-607. doi: 10.1038/s41580-019-0159-6. Epub 2019 Aug 9.
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Advances in epigenetics link genetics to the environment and disease.表观遗传学的进展将遗传学与环境和疾病联系起来。
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8
Microfluidic epigenomic mapping technologies for precision medicine.微流控表观基因组图谱技术在精准医疗中的应用
Lab Chip. 2019 Aug 21;19(16):2630-2650. doi: 10.1039/c9lc00407f. Epub 2019 Jul 24.
9
Systematic evaluation of library preparation methods and sequencing platforms for high-throughput whole genome bisulfite sequencing.高通量全基因组 bisulfite 测序文库制备方法和测序平台的系统评价。
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CUT&Tag for efficient epigenomic profiling of small samples and single cells.CUT&Tag 技术可高效地对小样本和单细胞进行表观基因组分析。
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微流控技术在实现精准表观基因组学中的转化机会。

Translational Opportunities for Microfluidic Technologies to Enable Precision Epigenomics.

机构信息

Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, United States.

Epigenomics Program, Center for Individualized Medicine, Department of Physiology and Biomedical Engineering, and Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota 55905, United States.

出版信息

Anal Chem. 2020 Jun 16;92(12):7989-7997. doi: 10.1021/acs.analchem.0c01288. Epub 2020 Jun 4.

DOI:10.1021/acs.analchem.0c01288
PMID:32496751
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8053002/
Abstract

Personalizing health care by taking genetic, environmental, and lifestyle factors into account is central to modern medicine. The crucial and pervasive roles epigenetic factors play in shaping gene-environment interactions are now well recognized. However, identifying robust epigenetic biomarkers and translating them to clinical tests has been difficult due in part to limitations of available platforms to detect epigenetic features genome-wide (epigenomic assays). This Feature introduces several important prospects for precision epigenomics, highlights capabilities and limitations of current laboratory technologies, and emphasizes opportunities for microfluidic tools to facilitate translation of epigenetic analyses to the clinic, with a particular focus on methods to profile gene-associated histone modifications and their impacts on chromatin structure and gene expression.

摘要

个性化医疗是指在医疗实践中综合考虑个体的遗传、环境和生活方式等因素。目前,人们已经充分认识到表观遗传因素在调节基因-环境相互作用方面发挥着关键而普遍的作用。然而,由于目前的全基因组检测平台(表观基因组分析)在检测表观遗传特征方面存在局限性,因此确定稳健的表观遗传生物标志物并将其转化为临床检测一直具有挑战性。本文主要介绍了精准表观基因组学的几个重要前景,重点介绍了当前实验室技术的功能和局限性,并强调了微流控工具在将表观遗传学分析转化为临床实践方面的机会,特别关注了分析与基因相关的组蛋白修饰及其对染色质结构和基因表达影响的方法。