Physical Chemistry I - Biophysical Chemistry, Faculty of Chemistry and Chemical Biology, Technical University Dortmund, Otto-Hahn-Street 4a, 44227, Dortmund, Germany.
Center for Biotechnology & Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, New York, 12180, United States.
Sci Rep. 2017 Aug 29;7(1):9864. doi: 10.1038/s41598-017-10689-0.
Guanosine monophosphate, among the nucleotides, has the unique property to self-associate and form nanoscale cylinders consisting of hydrogen-bonded G-quartet disks, which are stacked on top of one another. Such self-assemblies describe not only the basic structural motif of G-quadruplexes formed by, e.g., telomeric DNA sequences, but are also interesting targets for supramolecular chemistry and nanotechnology. The G-quartet stacks serve as an excellent model to understand the fundamentals of their molecular self-association and to unveil their application spectrum. However, the thermodynamic stability of such self-assemblies over an extended temperature and pressure range is largely unexplored. Here, we report a combined FTIR and NMR study on the temperature and pressure stability of G-quartet stacks formed by disodium guanosine 5'-monophosphate (Na5'-GMP). We found that under abyssal conditions, where temperatures as low as 5 °C and pressures up to 1 kbar are reached, the self-association of Na5'-GMP is most favoured. Beyond those conditions, the G-quartet stacks dissociate laterally into monomer stacks without significantly changing the longitudinal dimension. Among the tested alkali cations, K is the most efficient one to elevate the temperature as well as the pressure limits of GMP self-assembly.
鸟苷一磷酸,在核苷酸中,具有独特的自组装特性,可以形成由氢键连接的 G-四联体盘组成的纳米级圆柱,这些盘相互堆叠。这种自组装不仅描述了由端粒 DNA 序列等形成的 G-四联体的基本结构基元,而且也是超分子化学和纳米技术的有趣目标。G-四联体堆叠作为理解其分子自组装基本原理并揭示其应用范围的理想模型。然而,这种自组装在较宽的温度和压力范围内的热力学稳定性在很大程度上尚未得到探索。在这里,我们报告了通过二钠鸟苷 5'-单磷酸(Na5'-GMP)形成的 G-四联体堆叠的 FTIR 和 NMR 联合研究,以研究其在温度和压力稳定性。我们发现,在深海条件下,温度低至 5°C,压力高达 1 kbar,Na5'-GMP 的自组装最有利。超出这些条件后,G-四联体堆叠会横向解离成单体堆叠,而纵向尺寸没有明显变化。在所测试的碱金属阳离子中,K 是提高 GMP 自组装的温度和压力极限最有效的阳离子。