Tello Cajiao John James, Carante Mario Pietro, Bernal Rodriguez Mario Antonio, Ballarini Francesca
University of Pavia, Physics Department, via Bassi 6, I-27100 Pavia, Italy; INFN-Sezione di Pavia, via Bassi 6, I-27100 Pavia, Italy; Universidade Estadual de Campinas. Cidade Universitária Zeferino Vaz, Campinas, SP, Brazil.
University of Pavia, Physics Department, via Bassi 6, I-27100 Pavia, Italy; INFN-Sezione di Pavia, via Bassi 6, I-27100 Pavia, Italy.
DNA Repair (Amst). 2017 Oct;58:38-46. doi: 10.1016/j.dnarep.2017.08.007. Epub 2017 Aug 24.
Although chromosome aberrations are known to derive from distance-dependent mis-rejoining of chromosome fragments, evaluating whether a certain model describes such "proximity effects" better than another one is complicated by the fact that different approaches have often been tested under different conditions. Herein, a biophysical model ("BIANCA", i.e. BIophysical ANalysis of Cell death and chromosome Aberrations) was upgraded, implementing explicit chromosome-arm domains and two new models for the dependence of the rejoining probability on the fragment initial distance, r. Such probability was described either by an exponential function like exp(-r/r), or by a Gaussian function like exp(-r/2σ), where r and σ were adjustable parameters. The second, and last, parameters was the yield of "Cluster Lesions" (CL), where "Cluster Lesion" defines a critical DNA damage producing two independent chromosome fragments. The model was applied to low-LET-irradiated lymphocytes (doses: 1-4Gy) and fibroblasts (1-6.1Gy). Good agreement with experimental yields of dicentrics and centric rings, and thus their ratio ("F-ratio"), was found by both the exponential model (with r=0.8μm for lymphocytes and 0.7μm for fibroblasts) and the Gaussian model (with σ=1.1μm for lymphocytes and 1.3μm for fibroblasts). While the former also allowed reproducing dose-responses for excess acentric fragments, the latter substantially underestimated the experimental curves. Both models provided G-ratios (ratio of acentric to centric rings) higher than those expected from randomness, although the values calculated by the Gaussian model were lower than those calculated by the exponential one. For lymphocytes the calculated G-ratios were in good agreement with the experimental ones, whereas for fibroblasts both models substantially underestimated the experimental results, which deserves further investigation. This work suggested that, although both models performed better than a step model (which previously allowed reproducing the F-ratio but underestimated the G-ratio), an exponential function describes proximity effects better than a Gaussian one.
虽然已知染色体畸变源于染色体片段的距离依赖性错误重连,但评估某一模型是否比另一模型更能描述这种“邻近效应”却很复杂,因为不同方法常常是在不同条件下进行测试的。在此,一个生物物理模型(“BIANCA”,即细胞死亡和染色体畸变的生物物理分析)得到了升级,纳入了明确的染色体臂结构域以及两种关于重连概率与片段初始距离r的依赖关系的新模型。这种概率可以用指数函数exp(-r/r)来描述,也可以用高斯函数exp(-r/2σ)来描述,其中r和σ是可调参数。第二个也是最后一个参数是“簇状损伤”(CL)的产额,“簇状损伤”定义为产生两个独立染色体片段的关键DNA损伤。该模型应用于低线性能量传递(low-LET)辐照的淋巴细胞(剂量:1 - 4Gy)和成纤维细胞(1 - 6.1Gy)。指数模型(淋巴细胞的r = 0.8μm,成纤维细胞的r = 0.7μm)和高斯模型(淋巴细胞的σ = 1.1μm,成纤维细胞的σ = 1.3μm)都与双着丝粒和着丝粒环的实验产额以及它们的比值(“F比值”)达成了良好的一致。虽然前者还能够重现多余无着丝粒片段的剂量响应,但后者大幅低估了实验曲线。两个模型给出的G比值(无着丝粒环与着丝粒环的比值)都高于随机预期值,不过高斯模型计算出的值低于指数模型计算出的值。对于淋巴细胞,计算出的G比值与实验值吻合良好,而对于成纤维细胞,两个模型都大幅低估了实验结果,这值得进一步研究。这项工作表明,虽然两个模型都比一个阶梯模型表现更好(该阶梯模型之前能够重现F比值,但低估了G比值),但指数函数比高斯函数更能描述邻近效应。