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本文引用的文献

1
Phylogenetic structure of European Enteritidis outbreak correlates with national and international egg distribution network.欧洲肠炎沙门氏菌暴发的系统发育结构与国家和国际鸡蛋分销网络相关。
Microb Genom. 2016 Aug 25;2(8):e000070. doi: 10.1099/mgen.0.000070. eCollection 2016 Aug.
2
Prospective use of whole genome sequencing (WGS) detected a multi-country outbreak of Salmonella Enteritidis.前瞻性地使用全基因组测序(WGS)检测到肠炎沙门氏菌的多国暴发。
Epidemiol Infect. 2017 Jan;145(2):289-298. doi: 10.1017/S0950268816001941. Epub 2016 Oct 26.
3
Evolution and Diversity of Listeria monocytogenes from Clinical and Food Samples in Shanghai, China.中国上海临床和食品样本中单核细胞增生李斯特菌的进化与多样性
Front Microbiol. 2016 Jul 22;7:1138. doi: 10.3389/fmicb.2016.01138. eCollection 2016.
4
Practical Value of Food Pathogen Traceability through Building a Whole-Genome Sequencing Network and Database.通过构建全基因组测序网络和数据库实现食品病原体溯源的实用价值
J Clin Microbiol. 2016 Aug;54(8):1975-83. doi: 10.1128/JCM.00081-16. Epub 2016 Mar 23.
5
Rapid whole-genome sequencing for surveillance of Salmonella enterica serovar enteritidis.用于肠炎沙门氏菌肠炎血清型监测的快速全基因组测序
Emerg Infect Dis. 2014 Aug;20(8):1306-14. doi: 10.3201/eid2008.131399.
6
Phylogenetics and differentiation of Salmonella Newport lineages by whole genome sequencing.全基因组测序分析沙门氏菌纽波特谱系的系统发育和分化。
PLoS One. 2013;8(2):e55687. doi: 10.1371/journal.pone.0055687. Epub 2013 Feb 11.
7
On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004.在进化历史、种群遗传学以及 JEGX01.0004 型肠炎沙门氏菌分离株的多样性方面。
PLoS One. 2013;8(1):e55254. doi: 10.1371/journal.pone.0055254. Epub 2013 Jan 30.
8
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
9
Single nucleotide polymorphisms that differentiate two subpopulations of Salmonella enteritidis within phage type.区分噬菌体分型内肠炎沙门氏菌两个亚群的单核苷酸多态性。
BMC Res Notes. 2011 Sep 26;4:369. doi: 10.1186/1756-0500-4-369.
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Identification of a salmonellosis outbreak by means of molecular sequencing.通过分子测序鉴定沙门氏菌病暴发。
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从野生小鼠中分离出的64株肠炎沙门氏菌血清型菌株的基因组序列草图

Draft Genome Sequences of 64 Serotype Enteritidis Isolates Obtained from Wild Mice.

作者信息

Guard Jean, Cao Guojie, Kastanis George J, Davison Sherrill, McClelland Michael, Sanchez Leon Maria, Zheng Jie, Brown Eric, Allard Marc W

机构信息

U.S. National Poultry Research Center, U.S. Department of Agriculture, Athens, Georgia, USA

Center for Food Safety and Applied Nutrition, Food and Drug Administration, College Park, Maryland, USA.

出版信息

Genome Announc. 2017 Sep 7;5(36):e00953-17. doi: 10.1128/genomeA.00953-17.

DOI:10.1128/genomeA.00953-17
PMID:28883147
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5589541/
Abstract

serotype Enteritidis is a foodborne pathogen of global concern, because it is frequently isolated from foods and patients. Draft genome sequences are reported here for 64  Enteritidis strains isolated from the intestines and spleens of mice caught live on chicken farms in the U.S. Northeast. The availability of these genomes provides baseline information on the genomic diversity of  Enteritidis during the 1990s, when foodborne outbreaks traced to internal contamination of eggs were prevalent.

摘要

肠炎血清型是一种全球关注的食源性病原体,因为它经常从食品和患者中分离出来。本文报道了从美国东北部养鸡场活捉的小鼠的肠道和脾脏中分离出的64株肠炎菌株的基因组草图序列。这些基因组的可用性提供了20世纪90年代肠炎基因组多样性的基线信息,当时由鸡蛋内部污染引起的食源性疾病爆发很普遍。