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eBioKit,一个独立的生物信息学教育平台。

The eBioKit, a stand-alone educational platform for bioinformatics.

作者信息

Hernández-de-Diego Rafael, de Villiers Etienne P, Klingström Tomas, Gourlé Hadrien, Conesa Ana, Bongcam-Rudloff Erik

机构信息

SLU-Global Bioinformatics Centre, Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden.

International Livestock Research Institute (ILRI), Nairobi, Kenya.

出版信息

PLoS Comput Biol. 2017 Sep 14;13(9):e1005616. doi: 10.1371/journal.pcbi.1005616. eCollection 2017 Sep.

Abstract

Bioinformatics skills have become essential for many research areas; however, the availability of qualified researchers is usually lower than the demand and training to increase the number of able bioinformaticians is an important task for the bioinformatics community. When conducting training or hands-on tutorials, the lack of control over the analysis tools and repositories often results in undesirable situations during training, as unavailable online tools or version conflicts may delay, complicate, or even prevent the successful completion of a training event. The eBioKit is a stand-alone educational platform that hosts numerous tools and databases for bioinformatics research and allows training to take place in a controlled environment. A key advantage of the eBioKit over other existing teaching solutions is that all the required software and databases are locally installed on the system, significantly reducing the dependence on the internet. Furthermore, the architecture of the eBioKit has demonstrated itself to be an excellent balance between portability and performance, not only making the eBioKit an exceptional educational tool but also providing small research groups with a platform to incorporate bioinformatics analysis in their research. As a result, the eBioKit has formed an integral part of training and research performed by a wide variety of universities and organizations such as the Pan African Bioinformatics Network (H3ABioNet) as part of the initiative Human Heredity and Health in Africa (H3Africa), the Southern Africa Network for Biosciences (SAnBio) initiative, the Biosciences eastern and central Africa (BecA) hub, and the International Glossina Genome Initiative.

摘要

生物信息学技能对许多研究领域而言已变得至关重要;然而,合格研究人员的供应通常低于需求,因此,增加有能力的生物信息学专业人员数量的培训是生物信息学领域的一项重要任务。在开展培训或实践教程时,由于在线工具不可用或版本冲突可能会导致培训延迟、复杂化甚至无法成功完成,因此对分析工具和存储库缺乏控制往往会在培训期间导致不理想的情况。eBioKit是一个独立的教育平台,它托管了众多用于生物信息学研究的工具和数据库,并允许在可控环境中进行培训。与其他现有教学解决方案相比,eBioKit的一个关键优势在于,所有所需的软件和数据库都本地安装在系统上,大大减少了对互联网的依赖。此外,eBioKit的架构已证明自身在可移植性和性能之间实现了出色的平衡,这不仅使eBioKit成为一个卓越的教育工具,还为小型研究团队提供了一个在其研究中纳入生物信息学分析的平台。因此,eBioKit已成为众多大学和组织(如泛非生物信息学网络(H3ABioNet),它是非洲人类遗传与健康计划(H3Africa)的一部分;南部非洲生物科学网络(SAnBio)计划;东非和中非生物科学(BecA)中心;以及国际舌蝇基因组计划)开展培训和研究不可或缺的一部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7bf7/5598936/b4764fa7f5d9/pcbi.1005616.g001.jpg

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