Department of Systems Biology, Harvard Medical School, Boston, MA, 02115, USA.
Department of Physics, University of California at San Diego, La Jolla, CA, 92093, USA.
Sci Rep. 2017 Sep 19;7(1):11866. doi: 10.1038/s41598-017-12144-6.
Overflow metabolism in the presence of oxygen occurs at fast growth rates in a wide range of organisms including bacteria, yeast and cancer cells and plays an important role in biotechnology during production of proteins or metabolic compounds. As recently suggested, overflow metabolism can be understood in terms of proteome allocation, since fermentation has lower proteome cost for energy production than respiration. Here, we demonstrate that ArcA overexpression in aerobic conditions, results in downregulation of respiratory pathways and enhanced growth rates on glycolytic substrates of E. coli, coinciding with acetate excretion and increased carbon uptake rates. These results suggest that fermentation enables faster growth and demonstrate that fermentation on many glycolytic carbon sources is not limited by carbon uptake. Hence, these findings are difficult to reconcile with many alternative hypotheses that have been proposed for the origin of overflow metabolism and the growth rate dependence of fermentation and respiration, which are based on limited capacity of respiration or limitations in uptake rates and catabolic pathways. Instead, as suggested by increased lag phases of ArcA overexpression strains, respiratory energy metabolism may be related to a general preparatory response, observed for decreasing growth rates, but with limited advantages for maximizing steady-state growth rate.
在包括细菌、酵母和癌细胞在内的多种生物体中,氧气存在下的代谢过剩会在快速生长速率下发生,并在蛋白质或代谢化合物生产的生物技术中发挥重要作用。正如最近所建议的,代谢过剩可以根据蛋白质组分配来理解,因为发酵在能量产生方面的蛋白质组成本低于呼吸作用。在这里,我们证明了在需氧条件下过表达 ArcA 会导致呼吸途径下调,并且在大肠杆菌的糖酵解底物上的生长速率提高,同时伴随着乙酸盐的排泄和碳摄取率的增加。这些结果表明发酵可以实现更快的生长,并证明了许多糖酵解碳源上的发酵并不受碳摄取的限制。因此,这些发现与许多已被提出的关于代谢过剩的起源和发酵与呼吸的生长速率依赖性的替代假设难以调和,这些假设基于呼吸作用的有限能力或摄取率和分解代谢途径的限制。相反,正如 ArcA 过表达菌株的延迟期增加所表明的那样,呼吸能量代谢可能与观察到的降低生长速率有关,但对于最大化稳态生长速率的优势有限。