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基因表达分析:霉酚酸酯治疗有症状性颈动脉狭窄相关关键基因的调控。

Gene expression analysis: Regulation of key genes associated with mycophenolate mofetil treatment of symptomatic carotid artery stenosis.

机构信息

Department of Radiology, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei 430022, P.R. China.

Department of Neurosurgery, The Affiliated Hospital of Inner Mongolia Medical University, Hohhot, Inner Mongolia 010050, P.R. China.

出版信息

Mol Med Rep. 2017 Nov;16(5):7450-7458. doi: 10.3892/mmr.2017.7532. Epub 2017 Sep 20.

Abstract

The present study analyzed gene expression arrays to identify differentially-expressed genes (DEGs) between mycophenolate mofetil (MMF)‑treated and placebo‑treated patients with symptomatic carotid artery stenosis (SCAS). In addition, the key genes involved in the pharmacology of MMF treatment in patients with SCAS were identified. The gene expression dataset was obtained from a Gene Expression Omnibus database, which included 9 MMF‑treated and 11 placebo‑treated samples. The DEGs were identified between MMF and placebo groups using R software. Furthermore, a protein‑protein interaction (PPI) network of the identified DEGS was constructed. The Database for Annotation, Visualization and Integrated Discovery was used to perform Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses of the 19 most significant DEGs. A total of 210 DEGs between the MMF and placebo groups were screened and their PPI was constructed. GO function analysis revealed that the 19 DEGs were predominantly involved in the tyrosine phosphorylation of signal transducer and activator of transcription‑5 protein, which is closely associated with the activation of T cells. The KEGG pathway analysis suggested that the main metabolic pathways of the 19 DEGs were associated with the pharmacological functioning of MMF in activated T cells. In conclusion, the present study identified numerous key DEGs associated with SCAS, and the results suggested that v‑kit Hardy‑Zuckerman 4 feline sarcoma viral oncogene homolog and apelin may serve important roles in the MMF treatment of SCAS.

摘要

本研究通过分析基因表达谱,鉴定出在有症状性颈动脉狭窄(SCAS)患者中霉酚酸酯(MMF)治疗与安慰剂治疗之间差异表达的基因(DEGs)。此外,还鉴定了 SCAS 患者 MMF 治疗药理学中涉及的关键基因。该基因表达数据集来自基因表达综合数据库,其中包括 9 例 MMF 治疗和 11 例安慰剂治疗的样本。使用 R 软件在 MMF 组和安慰剂组之间鉴定 DEGs。此外,构建了鉴定出的 DEGs 的蛋白质-蛋白质相互作用(PPI)网络。使用数据库注释、可视化和综合发现对 19 个最显著的 DEGs 进行基因本体(GO)和京都基因与基因组百科全书(KEGG)通路富集分析。筛选出 MMF 组和安慰剂组之间的 210 个 DEGs,并构建其 PPI。GO 功能分析表明,19 个 DEGs 主要参与信号转导和转录激活因子 5 蛋白的酪氨酸磷酸化,这与 T 细胞的激活密切相关。KEGG 通路分析表明,19 个 DEGs 的主要代谢途径与 MMF 在活化 T 细胞中的药理学作用有关。综上所述,本研究鉴定出许多与 SCAS 相关的关键 DEGs,结果表明 v-kit Hardy-Zuckerman 4 猫肉瘤病毒致癌基因同源物和 Apelin 在 MMF 治疗 SCAS 中可能发挥重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5501/5865876/fdae5b0bd702/mmr-16-05-7450-g00.jpg

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