Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago , 5735 South Ellis Avenue, Chicago, Illinois 60637, United States.
Acc Chem Res. 2017 Mar 21;50(3):594-598. doi: 10.1021/acs.accounts.6b00572.
This Commentary will describe the goal of developing and implementing novel, powerful, and integrated multiscale computer simulation methodology capable of accessing the large length and long time scales inherent in the behavior of biomolecular, multiprotein "active matter" complexes within the context of cellular biology. Examples include those involved in the actin-based cytoskeleton and its mechanochemistry. The primary objective is to connect detailed molecular and chemical properties with the key mesoscopic features manifest at the scales of cellular biology through a transformative theoretical and computer simulation approach, based on real physical and chemical interactions. This multiscale computational work would also make critical contact with rapidly developing experimental techniques such as super-resolution optical imaging, single molecule spectroscopy, and cryo-electron tomography, which are providing remarkable insight into the internal mesoscale self-organization and dynamics of cells.
本述评将描述开发和实施新型、强大且集成的多尺度计算机模拟方法的目标,这种方法能够在细胞生物学的背景下获取生物分子、多蛋白“活性物质”复合物行为中固有的大长度和长时间尺度。此类复合物的例子包括肌动蛋白细胞骨架及其机械化学。主要目标是通过基于真实物理和化学相互作用的变革性理论和计算机模拟方法,将详细的分子和化学特性与在细胞生物学尺度上表现出来的关键介观特征联系起来。这种多尺度计算工作还将与快速发展的实验技术(如超分辨率光学成像、单分子光谱学和冷冻电子断层扫描)进行关键性接触,这些技术为细胞内部介观自组织和动力学提供了显著的见解。