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在一个阿联酋家庭中鉴定ILDR1基因的一种新型移码突变、突变综述及表型-基因型相关性

Identification of a novel frameshift mutation in the ILDR1 gene in a UAE family, mutations review and phenotype genotype correlation.

作者信息

Tlili Abdelaziz, Fahd Al Mutery Abdullah, Mahfood Mona, Kamal Eddine Ahmad Mohamed Walaa, Bajou Khalid

机构信息

Department of Applied Biology, College of Sciences, University of Sharjah, Sharjah, United Arab Emirates.

Human Genetics and Stem cell laboratory, Research Institute of Sciences and Engineering, University of Sharjah, Sharjah, United Arab Emirates.

出版信息

PLoS One. 2017 Sep 25;12(9):e0185281. doi: 10.1371/journal.pone.0185281. eCollection 2017.

DOI:10.1371/journal.pone.0185281
PMID:28945813
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5612695/
Abstract

Autosomal recessive non-syndromic hearing loss is one of the most common monogenic diseases. It is characterized by high allelic and locus heterogeneities that make a precise diagnosis difficult. In this study, whole-exome sequencing was performed for an affected patient allowing us to identify a new frameshift mutation (c.804delG) in the Immunoglobulin-Like Domain containing Receptor-1 (ILDR1) gene. Direct Sanger sequencing and segregation analysis were performed for the family pedigree. The mutation was homozygous in all affected siblings but heterozygous in the normal consanguineous parents. The present study reports a first ILDR1 gene mutation in the UAE population and confirms that the whole-exome sequencing approach is a robust tool for the diagnosis of monogenic diseases with high levels of allelic and locus heterogeneity. In addition, by reviewing all reported ILDR1 mutations, we attempt to establish a genotype phenotype correlation to explain the phenotypic variability observed at low frequencies.

摘要

常染色体隐性非综合征性听力损失是最常见的单基因疾病之一。其特征在于高度的等位基因和位点异质性,这使得精确诊断变得困难。在本研究中,对一名患病患者进行了全外显子组测序,使我们能够在含免疫球蛋白样结构域受体1(ILDR1)基因中鉴定出一个新的移码突变(c.804delG)。对家族谱系进行了直接桑格测序和分离分析。该突变在所有患病兄弟姐妹中为纯合子,但在正常近亲父母中为杂合子。本研究报告了阿联酋人群中首个ILDR1基因突变,并证实全外显子组测序方法是诊断具有高度等位基因和位点异质性的单基因疾病的有力工具。此外,通过回顾所有已报道的ILDR1突变,我们试图建立基因型-表型相关性,以解释低频观察到的表型变异性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6f83/5612695/a95584c1903b/pone.0185281.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6f83/5612695/3057f51e79bf/pone.0185281.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6f83/5612695/06f3b19bfd1c/pone.0185281.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6f83/5612695/a95584c1903b/pone.0185281.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6f83/5612695/3057f51e79bf/pone.0185281.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6f83/5612695/06f3b19bfd1c/pone.0185281.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6f83/5612695/a95584c1903b/pone.0185281.g003.jpg

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全基因组关联荟萃分析确定了五个与年龄相关性听力损伤相关的新位点。
Sci Rep. 2019 Oct 23;9(1):15192. doi: 10.1038/s41598-019-51630-x.
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