Soares Fábio Lino, Marcon Joelma, Pereira E Silva Michele de Cássia, Khakhum Nittaya, Cerdeira Louise Teixeira, Ottoni Júlia Ronzella, Domingos Daniela Ferreira, Taketani Rodrigo Gouvea, de Oliveira Valéria Maia, Lima André Oliveira de Souza, Azevedo João Lucio, Rodrigues Jorge Luiz Mazza, Andreote Fernando Dini
Center of Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, São Paulo 13400-970, Brazil.
Department of Biology, University of Texas, Arlington, TX 76019, USA.
Bioengineering (Basel). 2017 Jul 9;4(3):62. doi: 10.3390/bioengineering4030062.
The use of culture-independent approaches, such as metagenomics, provides complementary access to environmental microbial diversity. Mangrove environments represent a highly complex system with plenty of opportunities for finding singular functions. In this study we performed a functional screening of fosmid libraries obtained from an oil contaminated mangrove site, with the purpose of identifying clones expressing hydrolytic activities. A novel gene coding for a β--acetylhexosaminidase with 355 amino acids and 43KDa was retrieved and characterized. The translated sequence showed only 38% similarity to a β--acetylhexosaminidase gene in the genome of Veillonella sp. CAG:933, suggesting that it might constitute a novel enzyme. The enzyme was expressed, purified, and characterized for its enzymatic activity on carboxymethyl cellulose, p-Nitrophenyl-2acetamide-2deoxy-β-d-glucopyranoside, p-Nitrophenyl-2acetamide-2deoxy-β-d-galactopyranoside, and 4-Nitrophenyl β-d-glucopyranoside, presenting β--acetylglucosaminidase, β-glucosidase, and β-1,4-endoglucanase activities. The enzyme showed optimum activity at 30 °C and pH 5.5. The characterization of the putative novel β--acetylglucosaminidase enzyme reflects similarities to characteristics of the environment explored, which differs from milder conditions environments. This work exemplifies the application of cultivation-independent molecular techniques to the mangrove microbiome for obtaining a novel biotechnological product.
使用宏基因组学等不依赖培养的方法,能够补充获取环境微生物多样性的途径。红树林环境是一个高度复杂的系统,有大量机会发现独特功能。在本研究中,我们对从受石油污染的红树林地点获得的fosmid文库进行了功能筛选,目的是鉴定表达水解活性的克隆。我们检索并鉴定了一个编码β - 乙酰己糖胺酶的新基因,该酶含有355个氨基酸,分子量为43KDa。翻译后的序列与韦荣球菌属CAG:933基因组中的β - 乙酰己糖胺酶基因仅显示38%的相似性,这表明它可能构成一种新型酶。该酶被表达、纯化,并对其在羧甲基纤维素、对硝基苯基 - 2 - 乙酰氨基 - 2 - 脱氧 - β - D - 吡喃葡萄糖苷、对硝基苯基 - 2 - 乙酰氨基 - 2 - 脱氧 - β - D - 吡喃半乳糖苷和4 - 硝基苯基β - D - 吡喃葡萄糖苷上的酶活性进行了表征,呈现出β - 乙酰氨基葡萄糖苷酶、β - 葡萄糖苷酶和β - 1,4 - 内切葡聚糖酶活性。该酶在30℃和pH 5.5时表现出最佳活性。对假定的新型β - 乙酰氨基葡萄糖苷酶的表征反映了与所探索环境特征的相似性,这与温和条件的环境不同。这项工作例证了将不依赖培养的分子技术应用于红树林微生物群落以获得新型生物技术产品。