Yogo Rina, Yanaka Saeko, Yagi Hirokazu, Martel Anne, Porcar Linoel, Ueki Yutaro, Inoue Rintaro, Sato Nobuhiro, Sugiyama Masaaki, Kato Koichi
Okazaki Institute for Integrative Bioscience and Institute for Molecular Science, National Institutes of Natural Sciences, 5-1 Higashiyama, Myodaiji, Okazaki, Aichi 444-8787, Japan.
Graduate School of Pharmaceutical Sciences, Nagoya City University, 3-1 Tanabe-dori, Mizuhoku, Nagoya 467-8603, Japan.
Biochem Biophys Rep. 2017 Aug 16;12:1-4. doi: 10.1016/j.bbrep.2017.08.004. eCollection 2017 Dec.
A recently developed integrative approach combining varied types of experimental data has been successfully applied to three-dimensional modelling of larger biomacromolecular complexes. Deuteration-assisted small-angle neutron scattering (SANS) plays a unique role in this approach by making it possible to observe selected components in the complex. It enables integrative modelling of biomolecular complexes based on building-block structures typically provided by X-ray crystallography. In this integrative approach, it is important to be aware of the flexible properties of the individual building blocks. Here we examine the ability of SANS to detect a subtle conformational change of a multidomain protein using the Fc portion of human immunoglobulin G (IgG) interacting with a soluble form of the low-affinity Fcγ receptor IIIb (sFcγRIIIb) as a model system. The IgG-Fc glycoprotein was subjected to SANS in the absence and presence of 75%-deuterated sFcγRIIIb, which was matched out in DO solution. This inverse contrast-matching technique enabled selective observation of SANS from IgG-Fc, thereby detecting its subtle structural deformation induced by the receptor binding. The SANS data were successfully interpreted by considering previously reported crystallographic data and an equilibrium between free and sFcγRIIIb-bound forms. Our SANS data thus demonstrate the applicability of SANS in the integrative approach dealing with biomacromolecular complexes composed of weakly associated building blocks with conformational plasticity.
一种最近开发的结合多种类型实验数据的综合方法已成功应用于更大生物大分子复合物的三维建模。氘代辅助小角中子散射(SANS)在这种方法中发挥着独特作用,它使得观察复合物中的选定成分成为可能。它能够基于通常由X射线晶体学提供的构建块结构对生物分子复合物进行综合建模。在这种综合方法中,了解各个构建块的灵活特性很重要。在这里,我们以与低亲和力Fcγ受体IIIb(sFcγRIIIb)的可溶性形式相互作用的人免疫球蛋白G(IgG)的Fc部分作为模型系统,研究SANS检测多结构域蛋白细微构象变化的能力。在不存在和存在75%氘代的sFcγRIIIb(在DO溶液中进行对比匹配)的情况下,对IgG-Fc糖蛋白进行SANS检测。这种反向对比匹配技术能够选择性地观察来自IgG-Fc的SANS,从而检测其由受体结合诱导的细微结构变形。通过考虑先前报道的晶体学数据以及游离形式和与sFcγRIIIb结合形式之间的平衡,成功解释了SANS数据。因此,我们的SANS数据证明了SANS在处理由具有构象可塑性的弱关联构建块组成的生物大分子复合物的综合方法中的适用性。