相似文献
1
GraphSpace: stimulating interdisciplinary collaborations in network biology.
Bioinformatics. 2017 Oct 1;33(19):3134-3136. doi: 10.1093/bioinformatics/btx382.
2
CellPublisher: a web platform for the intuitive visualization and sharing of metabolic, signalling and regulatory pathways.
Bioinformatics. 2010 Dec 1;26(23):2997-9. doi: 10.1093/bioinformatics/btq585. Epub 2010 Oct 14.
3
Supporting the SBML layout extension.
Bioinformatics. 2006 Dec 1;22(23):2966-7. doi: 10.1093/bioinformatics/btl520. Epub 2006 Oct 11.
4
Xtalk: a path-based approach for identifying crosstalk between signaling pathways.
Bioinformatics. 2016 Jan 15;32(2):242-51. doi: 10.1093/bioinformatics/btv549. Epub 2015 Sep 23.
5
Biographer: web-based editing and rendering of SBGN compliant biochemical networks.
Bioinformatics. 2013 Jun 1;29(11):1467-8. doi: 10.1093/bioinformatics/btt159. Epub 2013 Apr 10.
6
xMWAS: a data-driven integration and differential network analysis tool.
Bioinformatics. 2018 Feb 15;34(4):701-702. doi: 10.1093/bioinformatics/btx656.
7
Stochastic simulation GUI for biochemical networks.
Bioinformatics. 2007 Jul 15;23(14):1859-61. doi: 10.1093/bioinformatics/btm231. Epub 2007 Jun 22.
8
AlgoRun: a Docker-based packaging system for platform-agnostic implemented algorithms.
Bioinformatics. 2016 Aug 1;32(15):2396-8. doi: 10.1093/bioinformatics/btw120. Epub 2016 Mar 2.
9
EGAD: ultra-fast functional analysis of gene networks.
Bioinformatics. 2017 Feb 15;33(4):612-614. doi: 10.1093/bioinformatics/btw695.
10
Hive Panel Explorer: an interactive network visualization tool.
Bioinformatics. 2021 Apr 20;37(3):436-437. doi: 10.1093/bioinformatics/btaa683.
引用本文的文献
1
Cytoscape Web: bringing network biology to the browser.
Nucleic Acids Res. 2025 Jul 7;53(W1):W203-W212. doi: 10.1093/nar/gkaf365.
2
ARGem: a new metagenomics pipeline for antibiotic resistance genes: metadata, analysis, and visualization.
Front Genet. 2023 Sep 15;14:1219297. doi: 10.3389/fgene.2023.1219297. eCollection 2023.
3
Graphery: interactive tutorials for biological network algorithms.
Nucleic Acids Res. 2021 Jul 2;49(W1):W257-W262. doi: 10.1093/nar/gkab420.
4
NetConfer: a web application for comparative analysis of multiple biological networks.
BMC Biol. 2020 May 19;18(1):53. doi: 10.1186/s12915-020-00781-9.
5
Integrating protein localization with automated signaling pathway reconstruction.
BMC Bioinformatics. 2019 Dec 2;20(Suppl 16):505. doi: 10.1186/s12859-019-3077-x.
6
Hypergraph-based connectivity measures for signaling pathway topologies.
PLoS Comput Biol. 2019 Oct 25;15(10):e1007384. doi: 10.1371/journal.pcbi.1007384. eCollection 2019 Oct.
7
Network-based prediction of polygenic disease genes involved in cell motility.
BMC Bioinformatics. 2019 Jun 20;20(Suppl 12):313. doi: 10.1186/s12859-019-2834-1.
8
BEL Commons: an environment for exploration and analysis of networks encoded in Biological Expression Language.
Database (Oxford). 2018 Jan 1;2018:bay126. doi: 10.1093/database/bay126.
本文引用的文献
1
Pathways on demand: automated reconstruction of human signaling networks.
NPJ Syst Biol Appl. 2016 Mar 3;2:16002. doi: 10.1038/npjsba.2016.2. eCollection 2016.
2
From START to FINISH: computational analysis of cell cycle control in budding yeast.
NPJ Syst Biol Appl. 2015 Dec 10;1:15016. doi: 10.1038/npjsba.2015.16. eCollection 2015.
3
NDEx, the Network Data Exchange.
Cell Syst. 2015 Oct 28;1(4):302-305. doi: 10.1016/j.cels.2015.10.001.
4
Cytoscape.js: a graph theory library for visualisation and analysis.
Bioinformatics. 2016 Jan 15;32(2):309-11. doi: 10.1093/bioinformatics/btv557. Epub 2015 Sep 28.
5
Top-down network analysis to drive bottom-up modeling of physiological processes.
J Comput Biol. 2013 May;20(5):409-18. doi: 10.1089/cmb.2012.0274.
6
Cytoscape 2.8: new features for data integration and network visualization.
Bioinformatics. 2011 Feb 1;27(3):431-2. doi: 10.1093/bioinformatics/btq675. Epub 2010 Dec 12.
Zotero 插件