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鉴定与急性髓系白血病生存相关的 miRNA-mRNA 网络。

Identification of miRNA-mRNA Network Associated with Acute Myeloid Leukemia Survival.

机构信息

Department of Hematology, Taian City Central Hospital, Taian, Shandong, China (mainland).

Clinical Medicine Major (the Experimental Class of Excellent Doctor) Class 1 of Year 2013, Department of Basic Medicine, Taishan Medicine University, Taian, Shangdong, China (mainland).

出版信息

Med Sci Monit. 2017 Oct 1;23:4705-4714. doi: 10.12659/msm.903989.

Abstract

BACKGROUND Acute myeloid leukemia (AML) is a common hematologic malignancy of adults. The pathophysiological mechanism of AML is not well understood. The purpose of this study was to examine the crucial miRNAs and mRNAs associated with AML survival. MATERIAL AND METHODS The full clinical dataset of miRNA and mRNA expression profiling of AML patients was downloaded from The Cancer Genome Atlas database. Univariate Cox regression analysis was performed to obtain those miRNAs and mRNAs associated with AML survival. A miRNA-mRNA interaction network was constructed. The underlying functions of mRNAs were predicted through Kyoto Encyclopedia of Genes and Genomes (KEEG) pathway enrichment. The expression levels of miRNAs and mRNAs were detected by quantitative real-time polymerase chain reaction (qRT-PCR). RESULTS Fourteen miRNAs and 830 mRNAs associated with AML survival were identified. Of the 14 miRNAs, hsa-mir-425, hsa-mir-1201, and hsa-mir-1978 were identified as risk factors and the other 11 miRNAs were identified as protective factors of AML survival. For target-genes of miRNAs, GTSF1, RTN4R, and CD44 were the top risk factor target-genes associated with AML survival. An interaction network was constructed that including 607 miRNA-target gene pairs associated with AML survival. Target-genes associated with AML survival were significantly enriched in several pathways including pancreatic secretion, calcium signaling pathway, natural killer cell mediated cytotoxicity, and Alzheimer's disease. The qRT-PCR results were consistent with our bioinformatics analyses. CONCLUSIONS The miRNA hsa-mir-425 was identified as the top risk factor miRNA of AML survival and CD44 was identified as one of the top three risk factor target-genes associated with AML survival. Both hsa-mir-425 and CD44 may play key roles in progression and development of AML through calcium signaling pathway and natural killer cell mediated cytotoxicity.

摘要

背景

急性髓系白血病(AML)是成人常见的血液系统恶性肿瘤。AML 的病理生理机制尚不清楚。本研究旨在研究与 AML 生存相关的关键 miRNA 和 mRNA。

材料和方法

从癌症基因组图谱数据库下载 AML 患者 miRNA 和 mRNA 表达谱的完整临床数据集。进行单变量 Cox 回归分析,以获得与 AML 生存相关的 miRNA 和 mRNA。构建 miRNA-mRNA 相互作用网络。通过京都基因与基因组百科全书(KEGG)途径富集预测 mRNAs 的潜在功能。通过定量实时聚合酶链反应(qRT-PCR)检测 miRNA 和 mRNAs 的表达水平。

结果

确定了与 AML 生存相关的 14 个 miRNA 和 830 个 mRNA。在 14 个 miRNA 中,hsa-mir-425、hsa-mir-1201 和 hsa-mir-1978 被鉴定为 AML 生存的危险因素,而其他 11 个 miRNA 被鉴定为 AML 生存的保护因素。对于 miRNA 的靶基因,GTSF1、RTN4R 和 CD44 是与 AML 生存相关的顶级危险因素靶基因。构建了一个包含 607 个 miRNA-靶基因对与 AML 生存相关的相互作用网络。与 AML 生存相关的靶基因显著富集在几个途径中,包括胰腺分泌、钙信号通路、自然杀伤细胞介导的细胞毒性和阿尔茨海默病。qRT-PCR 结果与我们的生物信息学分析一致。

结论

hsa-mir-425 被鉴定为 AML 生存的顶级危险因素 miRNA,CD44 被鉴定为与 AML 生存相关的三个顶级危险因素靶基因之一。hsa-mir-425 和 CD44 可能通过钙信号通路和自然杀伤细胞介导的细胞毒性在 AML 的进展和发展中发挥关键作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eb9c/5634225/c2c691865630/medscimonit-23-4705-g001.jpg

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