Enge Martin, Arda H Efsun, Mignardi Marco, Beausang John, Bottino Rita, Kim Seung K, Quake Stephen R
Department of Bioengineering and Applied Physics, Stanford University, Stanford, CA 94305, USA.
Department of Developmental Biology, Stanford University School of Medicine, CA 94305, USA.
Cell. 2017 Oct 5;171(2):321-330.e14. doi: 10.1016/j.cell.2017.09.004. Epub 2017 Sep 28.
As organisms age, cells accumulate genetic and epigenetic errors that eventually lead to impaired organ function or catastrophic transformation such as cancer. Because aging reflects a stochastic process of increasing disorder, cells in an organ will be individually affected in different ways, thus rendering bulk analyses of postmitotic adult cells difficult to interpret. Here, we directly measure the effects of aging in human tissue by performing single-cell transcriptome analysis of 2,544 human pancreas cells from eight donors spanning six decades of life. We find that islet endocrine cells from older donors display increased levels of transcriptional noise and potential fate drift. By determining the mutational history of individual cells, we uncover a novel mutational signature in healthy aging endocrine cells. Our results demonstrate the feasibility of using single-cell RNA sequencing (RNA-seq) data from primary cells to derive insights into genetic and transcriptional processes that operate on aging human tissue.
随着生物体衰老,细胞会积累遗传和表观遗传错误,最终导致器官功能受损或发生灾难性转变,如癌症。由于衰老反映了一个无序程度不断增加的随机过程,器官中的细胞会以不同方式受到个体影响,因此对有丝分裂后成年细胞进行批量分析难以解释。在这里,我们通过对来自六个年龄段的八位捐赠者的2544个人类胰腺细胞进行单细胞转录组分析,直接测量衰老对人体组织的影响。我们发现,老年捐赠者的胰岛内分泌细胞表现出更高水平的转录噪声和潜在的命运漂移。通过确定单个细胞的突变历史,我们在健康衰老的内分泌细胞中发现了一种新的突变特征。我们的结果证明了使用来自原代细胞的单细胞RNA测序(RNA-seq)数据来深入了解在衰老人体组织中起作用的遗传和转录过程的可行性。