儒艮：一个基于 Ubuntu Linux 的 Docker 镜像，专注于生物信息学分析的可重复性。
Dugong: a Docker image, based on Ubuntu Linux, focused on reproducibility and replicability for bioinformatics analyses.
机构信息
Núcleo Integrado de Biotecnologia, Universidade de Mogi das Cruzes (UMC), 08780-911, Mogi das Cruzes, SP, Brazil.
Centro de Ciências Naturais e Humanas, Universidade Federal do ABC (UFABC), 09210-170, Santo André, SP, Brazil.
出版信息
Bioinformatics. 2018 Feb 1;34(3):514-515. doi: 10.1093/bioinformatics/btx554.
SUMMARY
This manuscript introduces and describes Dugong, a Docker image based on Ubuntu 16.04, which automates installation of more than 3500 bioinformatics tools (along with their respective libraries and dependencies), in alternative computational environments. The software operates through a user-friendly XFCE4 graphic interface that allows software management and installation by users not fully familiarized with the Linux command line and provides the Jupyter Notebook to assist in the delivery and exchange of consistent and reproducible protocols and results across laboratories, assisting in the development of open science projects.
AVAILABILITY AND IMPLEMENTATION
Source code and instructions for local installation are available at https://github.com/DugongBioinformatics, under the MIT open source license.
CONTACT
摘要
本文介绍并描述了 Dugong，这是一个基于 Ubuntu 16.04 的 Docker 镜像，它可以在替代计算环境中自动安装超过 3500 种生物信息学工具（以及它们各自的库和依赖项）。该软件通过用户友好的 XFCE4 图形界面运行，允许不熟悉 Linux 命令行的用户进行软件管理和安装，并提供 Jupyter Notebook 以协助在实验室之间传递和交换一致且可重复的协议和结果，从而有助于开放科学项目的发展。
可用性和实现
源代码和本地安装说明可在 https://github.com/DugongBioinformatics 上获得，遵循 MIT 开源许可证。
Zotero 插件