University of Manitoba, Department of Entomology, 12 Dafoe Rd., Winnipeg, MB R3T 2N2, Canada.
Genome. 2018 Jan;61(1):21-31. doi: 10.1139/gen-2017-0096. Epub 2017 Oct 3.
There is an ongoing campaign to DNA barcode the world's >20 000 bee species. Recent revisions of Lasioglossum (Dialictus) (Hymenoptera: Halictidae) for Canada and the eastern United States were completed using integrative taxonomy. DNA barcode data from 110 species of L. (Dialictus) are examined for their value in identification and discovering additional taxonomic diversity. Specimen identification success was estimated using the best close match method. Error rates were 20% relative to current taxonomic understanding. Barcode Index Numbers (BINs) assigned using Refined Single Linkage Analysis (RESL) and barcode gaps using the Automatic Barcode Gap Discovery (ABGD) method were also assessed. RESL was incongruent for 44.5% of species, although some cryptic diversity may exist. Forty-three of 110 species were part of merged BINs with multiple species. The barcode gap is non-existent for the data set as a whole and ABGD showed levels of discordance similar to the RESL. The viridatum species-group is particularly problematic, so that DNA barcodes alone would be misleading for species delimitation and specimen identification. Character-based methods using fixed nucleotide substitutions could improve specimen identification success in some cases. The use of DNA barcoding for species discovery for standard taxonomic practice in the absence of a well-defined barcode gap is discussed.
目前正在进行一项活动,旨在对全球超过 20000 种蜜蜂进行 DNA 条码标记。最近,对加拿大和美国东部的 Lasioglossum(Dialictus)(膜翅目:叶蜂科)进行了综合分类学修订。使用 110 种 L.(Dialictus)的 DNA 条码数据来检验其在鉴定和发现更多分类多样性方面的价值。使用最佳最近匹配方法估计标本鉴定的成功率。相对于当前的分类理解,错误率为 20%。还评估了使用 Refined Single Linkage Analysis (RESL) 分配的条码索引编号 (BIN) 和使用 Automatic Barcode Gap Discovery (ABGD) 方法的条码间隙。RESL 对于 44.5%的物种不一致,尽管可能存在一些隐性多样性。110 种中有 43 种属于具有多个物种的合并 BIN。整个数据集不存在条码间隙,ABGD 显示的不协调性与 RESL 相似。viridatum 物种群特别成问题,因此仅 DNA 条码对于物种界定和标本鉴定会产生误导。在没有明确条码间隙的情况下,使用基于特征的方法(使用固定核苷酸替换)可以提高某些情况下的标本鉴定成功率。讨论了在没有明确条码间隙的情况下,将 DNA 条码用于标准分类实践中的物种发现。