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利用数字基因表达谱分析暴露于对羟基苯甲酸乙酯的雄性黑腹果蝇的转录组

Transcriptome Analysis of Male Drosophila melanogaster Exposed to Ethylparaben Using Digital Gene Expression Profiling.

作者信息

Xue Peiqin, Zhao Xiaojun, Qin Mengbei, Shi Zhanghuan, Zhang Min, Gu Wei

机构信息

College of Life Sciences, Shaanxi Normal University, No. 620, West Chang'an Avenue, Chang'an District, Xi'an 710119, China.

出版信息

J Insect Sci. 2017 Jul 1;17(4). doi: 10.1093/jisesa/iex050.

Abstract

Ethylparaben (EP) has been shown to have estrogenic effects and can affect the normal development, longevity, and reproductive system of some animals. In this study, we investigated the effects of EP in male Drosophila melanogaster using transcriptome analysis or digital gene expression profiling. We then screened differentially expressed genes (DEGs) between the two groups (EP-treated and control group) of Drosophila, and performed clustering analysis, gene ontology (GO) function annotation, kyoto encyclopedia of gene and genomes metabolic pathway analysis. We found that EP enriched GO in three processes: cellular component, molecular function, and biological process. Consequently, we detected 13,959 genes and among them, 18 genes were identified to be significantly expressed between the EP-treated and control samples. Of these, seven genes were down-regulated, and eleven genes were up-regulated in EP-treated samples. Furthermore, four DEGs including two down-regulated genes (CG9465, CG9468) and two up-regulated genes (TotA, Sqz) were verified by real-time quantitative PCR. This study revealed the impact of EP on gene expression in fruit fly and provided new insight into the mechanisms of this response, which is helpful for understanding EP toxicity to humans.

摘要

对羟基苯甲酸乙酯(EP)已被证明具有雌激素效应,并会影响某些动物的正常发育、寿命及生殖系统。在本研究中,我们利用转录组分析或数字基因表达谱分析,研究了EP对雄性黑腹果蝇的影响。然后,我们筛选了两组果蝇(EP处理组和对照组)之间的差异表达基因(DEG),并进行了聚类分析、基因本体(GO)功能注释、京都基因与基因组百科全书代谢途径分析。我们发现,EP在细胞组分、分子功能和生物学过程这三个过程中使GO富集。因此,我们检测到13959个基因,其中有18个基因在EP处理样本和对照样本之间被鉴定为显著表达。其中,7个基因在EP处理样本中下调,11个基因上调。此外,通过实时定量PCR验证了4个DEG,包括2个下调基因(CG9465、CG9468)和2个上调基因(TotA、Sqz)。本研究揭示了EP对果蝇基因表达的影响,并为这种反应的机制提供了新的见解,这有助于理解EP对人类的毒性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f9ae/5510984/325881306ee0/iex050f1.jpg

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