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应激2转录因子:一个人工整理的植物应激反应中转录因子调控的数据库。

Stress2TF: a manually curated database of TF regulation in plant response to stress.

作者信息

Zhang Xiaodan, Yao Chensong, Fu Sicong, Xuan Hongdong, Wen Shuxian, Liu Chao, Li Fangdong, Liu Aiguo, Bi Shoudong, Zhang Shihua, Li Shaowen

机构信息

College of Information and Computer science, Anhui Agricultural University, Hefei 230036, China.

Graduate School, Anhui Agricultural University, Hefei 230036, China.

出版信息

Gene. 2018 Jan 5;638:36-40. doi: 10.1016/j.gene.2017.09.067. Epub 2017 Sep 30.

Abstract

Considerable studies demonstrate that plant transcription factors (TFs) play key regulatory roles in abiotic/biotic stress conditions, such as drought and pathogen attack. However, there is no effort dedicated to curate experimentally validated stress-TF regulatory relationships from these individual reports into a central database, which put an obstacle in the exploration of stress-TF regulations in plants. To address this issue, we presented a literature-curated database 'Stress2TF' that currently documented 1533 regulatory relationships between 71 abiotic/biotic stresses and 558 TFs in 47 plant species. Each entry in Stress2TF contains detailed information about a stress-TF relationship such as plant name, stress name, TF and brief description of stress-TF relationship. Stress2TF provided a user-friendly interface for entry browse, search and download. In addition, a submission page and several useful tools (e.g., BLAST, network visualization) were integrated. Stress2TF may be a valuable resource for the research of stress-TF regulatory mechanisms in plants. Stress2TF is available at http://csgenomics.ahau.edu.cn/Stress2TF.

摘要

大量研究表明,植物转录因子(TFs)在非生物/生物胁迫条件下,如干旱和病原体攻击中发挥着关键的调控作用。然而,目前尚无研究致力于将这些单独报告中经过实验验证的胁迫-TF调控关系整理到一个中央数据库中,这给植物胁迫-TF调控的探索带来了障碍。为了解决这个问题,我们推出了一个文献整理数据库“Stress2TF”,该数据库目前记录了47种植物中71种非生物/生物胁迫与558个转录因子之间的1533种调控关系。Stress2TF中的每个条目都包含有关胁迫-TF关系的详细信息,如植物名称、胁迫名称、转录因子以及胁迫-TF关系的简要描述。Stress2TF提供了一个用户友好的界面,用于条目浏览、搜索和下载。此外,还集成了一个提交页面和几个有用的工具(如BLAST、网络可视化)。Stress2TF可能是研究植物胁迫-TF调控机制的宝贵资源。可通过http://csgenomics.ahau.edu.cn/Stress2TF访问Stress2TF。

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