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干旱数据库(DroughtDB):一个由专家精心整理的植物干旱胁迫基因及其在九个物种中的同源基因的汇编。

DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species.

作者信息

Alter Svenja, Bader Kai C, Spannagl Manuel, Wang Yu, Bauer Eva, Schön Chris-Carolin, Mayer Klaus F X

机构信息

Plant Breeding, Center of Life and Food Sciences Weihenstephan, Technische Universität München, 85354 Freising, Germany, Department of Plant Genome and Systems Biology, Helmholtz Center Munich, German Research Center for Environmental Health, 85764 Neuherberg, Germany and College of Science, King Saud University, Riyadh 11451, Kingdom of Saudi Arabia.

Plant Breeding, Center of Life and Food Sciences Weihenstephan, Technische Universität München, 85354 Freising, Germany, Department of Plant Genome and Systems Biology, Helmholtz Center Munich, German Research Center for Environmental Health, 85764 Neuherberg, Germany and College of Science, King Saud University, Riyadh 11451, Kingdom of Saudi Arabia Plant Breeding, Center of Life and Food Sciences Weihenstephan, Technische Universität München, 85354 Freising, Germany, Department of Plant Genome and Systems Biology, Helmholtz Center Munich, German Research Center for Environmental Health, 85764 Neuherberg, Germany and College of Science, King Saud University, Riyadh 11451, Kingdom of Saudi Arabia

出版信息

Database (Oxford). 2015 May 15;2015:bav046. doi: 10.1093/database/bav046. Print 2015.

Abstract

Plants are sessile and therefore exposed to a number of biotic and abiotic stresses. Drought is the major abiotic stress restricting plant growth worldwide. A number of genes involved in drought stress response have already been characterized, mainly in the model species Arabidopsis thaliana and Oryza sativa. However, with the aim to produce drought tolerant crop varieties, it is of importance to identify the respective orthologs for each species. We have developed DroughtDB, a manually curated compilation of molecularly characterized genes that are involved in drought stress response. DroughtDB includes information about the originally identified gene, its physiological and/or molecular function and mutant phenotypes and provides detailed information about computed orthologous genes in nine model and crop plant species including maize and barley. All identified orthologs are interlinked with the respective reference entry in MIPS/PGSB PlantsDB, which allows retrieval of additional information like genome context and sequence information. Thus, DroughtDB is a valuable resource and information tool for researchers working on drought stress and will facilitate the identification, analysis and characterization of genes involved in drought stress tolerance in agriculturally important crop plants. Database URL: http://pgsb.helmholtz-muenchen.de/droughtdb/

摘要

植物固着生长,因此会面临多种生物和非生物胁迫。干旱是限制全球植物生长的主要非生物胁迫。许多参与干旱胁迫响应的基因已得到表征,主要集中在模式植物拟南芥和水稻中。然而,为了培育耐旱作物品种,确定每个物种各自的直系同源基因至关重要。我们开发了DroughtDB,这是一个经过人工整理的、与干旱胁迫响应相关的分子特征基因汇编。DroughtDB包含有关最初鉴定的基因、其生理和/或分子功能以及突变体表型的信息,并提供了包括玉米和大麦在内的9种模式植物和作物中计算出的直系同源基因的详细信息。所有鉴定出的直系同源基因都与MIPS/PGSB PlantsDB中的相应参考条目相互关联,这使得能够检索诸如基因组背景和序列信息等额外信息。因此,DroughtDB对于研究干旱胁迫的研究人员来说是一个宝贵的资源和信息工具,将有助于鉴定、分析和表征农业重要作物中参与耐旱性的基因。数据库网址:http://pgsb.helmholtz-muenchen.de/droughtdb/

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/374e/4433318/ee1b2b479670/bav046f1p.jpg

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