从日本温泉中分离出的光合门细菌CP2_5A菌株的基因组草图序列
Draft Genome Sequence of sp. CP2_5A, a Phototrophic Member of the Phylum Recovered from a Japanese Hot Spring.
作者信息
Ward Lewis M, McGlynn Shawn E, Fischer Woodward W
机构信息
Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, California, USA
Earth-Life Science Institute, Tokyo Institute of Technology, Meguro-ko, Japan.
出版信息
Genome Announc. 2017 Oct 5;5(40):e00821-17. doi: 10.1128/genomeA.00821-17.
Abstract
The phylum contains a single known phototrophic member, , which was recovered from a hot spring metagenome from Yellowstone National Park. Here, we expand the diversity of the genus with a genome recovered from a hot spring in Japan, extending the known range of this lineage to a new continent.
摘要
该门仅包含一个已知的光合营养成员， ，它是从黄石国家公园的一个温泉宏基因组中获得的。在此，我们通过从日本一个温泉中获得的基因组扩展了 属的多样性，将该谱系的已知分布范围扩展到了一个新的大陆。
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本文引用的文献
1
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Methods. 2016 Jun 1;102:3-11. doi: 10.1016/j.ymeth.2016.02.020. Epub 2016 Mar 21.
2
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
3
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6
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