a Department of Health Research, Ministry of Health and Family Welfare , Government of India , New Delhi 110001 , India.
b Molecular and Structural Biology Division , Central Drug Research Institute , Lucknow 226031 , India.
J Biomol Struct Dyn. 2018 Oct;36(13):3434-3443. doi: 10.1080/07391102.2017.1389305. Epub 2017 Oct 20.
Small heat shock protein16.3 (sHSP16.3) is a crucial protein for survival of Mycobacterium tuberculosis (MTB) in its host. Besides, this protein acts as a molecular chaperone during stress and is indispensable for MTB's growth, virulence and cell-wall thickening. sHSP16.3 is also a promising candidate for vaccine, serodiagnosis and drug design as well. In the present study, we have targeted sHSP16.3 with two phytochemicals, namely ursolic acid and carvacrol using in silico approach. Molecular docking analysis showed that both phytochemicals (ursolic acid and carvacrol) have docked with sHSP16.3 and shown tendency to inhibit the function of this vital protein of MTB. In addition, both compounds have exhibited strong compatibility with sHSP16.3 during whole 60 ns duration of molecular dynamics simulation. Further, the molecular mechanic/generalized Born/Poisson-Boltzmann surface area (MM/G/P/BSA) free energies were calculated which showed that both phytocompounds have stable and favourable binding energies causing strong binding with binding site of sHSP16.3. Taking together, the data of present study suggest that both phytocompounds may be potential inhibitor of sHSP16.3 of MTB and a best alternative to standard anti-tuberculosis drugs.
小热休克蛋白 16.3(sHSP16.3)是结核分枝杆菌(MTB)在宿主中存活的关键蛋白。此外,该蛋白在应激时作为分子伴侣发挥作用,是 MTB 生长、毒力和细胞壁增厚所不可或缺的。sHSP16.3 也是疫苗、血清诊断和药物设计的有前途的候选物。在本研究中,我们使用两种植物化学物质,即熊果酸和香芹酚,通过计算方法靶向 sHSP16.3。分子对接分析表明,这两种植物化学物质(熊果酸和香芹酚)都与 sHSP16.3 结合,并显示出抑制 MTB 这一重要蛋白功能的趋势。此外,在整个 60ns 的分子动力学模拟过程中,这两种化合物都表现出与 sHSP16.3 的强兼容性。此外,还计算了分子力学/广义 Born/Poisson-Boltzmann 表面积(MM/G/P/BSA)自由能,结果表明这两种植物化合物都具有稳定且有利的结合能,与 sHSP16.3 的结合位点具有很强的结合能力。总的来说,本研究的数据表明,这两种植物化合物可能是 MTB sHSP16.3 的潜在抑制剂,是标准抗结核药物的最佳替代品。