Marino Simeone, Kirschner Denise E
Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Computation (Basel). 2016;4(4). doi: 10.3390/computation4040039. Epub 2016 Oct 21.
Tuberculosis (TB) is a world-wide health problem with approximately 2 billion people infected with (Mtb, the causative bacterium of TB). The pathologic hallmark of Mtb infection in humans and Non-Human Primates (NHPs) is the formation of spherical structures, primarily in lungs, called granulomas. Infection occurs after inhalation of bacteria into lungs, where resident antigen-presenting cells (APCs), take up bacteria and initiate the immune response to Mtb infection. APCs traffic from the site of infection (lung) to lung-draining lymph nodes (LNs) where they prime T cells to recognize . These T cells, circulating back through blood, migrate back to lungs to perform their immune effector functions. We have previously developed a hybrid agent-based model (ABM, labeled ) describing in silico immune cell, bacterial (Mtb) and molecular behaviors during tuberculosis infection and recently linked that model to operate across three physiological compartments: lung (infection site where granulomas form), lung draining lymph node (LN, site of generation of adaptive immunity) and blood (a measurable compartment). Granuloma formation and function is captured by a spatio-temporal model (i.e., ABM), while LN and blood compartments represent temporal dynamics of the whole body in response to infection and are captured with ordinary differential equations (ODEs). In order to have a more mechanistic representation of APC trafficking from the lung to the lymph node, and to better capture antigen presentation in a draining LN, this current study incorporates the role of dendritic cells (DCs) in a computational fashion into .
The model was calibrated using experimental data from the lungs and blood of NHPs. The addition of DCs allowed us to investigate in greater detail mechanisms of recruitment, trafficking and antigen presentation and their role in tuberculosis infection.
The main conclusion of this study is that early events after Mtb infection are critical to establishing a timely and effective response. Manipulating CD8+ and CD4+ T cell proliferation rates, as well as DC migration early on during infection can determine the difference between bacterial clearance vs. uncontrolled bacterial growth and dissemination.
结核病(TB)是一个全球性的健康问题,约有20亿人感染了结核分枝杆菌(Mtb,结核病的致病菌)。人类和非人灵长类动物(NHPs)感染Mtb的病理标志是主要在肺部形成球形结构,称为肉芽肿。感染是在细菌吸入肺部后发生的,肺部的驻留抗原呈递细胞(APCs)摄取细菌并启动对Mtb感染的免疫反应。APCs从感染部位(肺部)转移到引流肺部的淋巴结(LNs),在那里它们激活T细胞以识别Mtb。这些T细胞通过血液循环回到肺部,以执行其免疫效应功能。我们之前开发了一种基于混合代理的模型(ABM,标记为 ),描述了结核病感染期间计算机模拟的免疫细胞、细菌(Mtb)和分子行为,最近还将该模型与三个生理隔室进行了关联:肺(形成肉芽肿的感染部位)、引流肺部的淋巴结(LN,适应性免疫产生部位)和血液(一个可测量的隔室)。肉芽肿的形成和功能由时空模型(即ABM)捕获,而LN和血液隔室代表全身对感染的时间动态,并由常微分方程(ODEs)捕获。为了更机械地表示APCs从肺到淋巴结的转运,并更好地捕获引流LN中的抗原呈递,本研究以计算方式将树突状细胞(DCs)的作用纳入 。
该模型使用来自NHPs肺部和血液的实验数据进行了校准。DCs的加入使我们能够更详细地研究招募、转运和抗原呈递的机制及其在结核病感染中的作用。
本研究的主要结论是,Mtb感染后的早期事件对于建立及时有效的反应至关重要。在感染早期操纵CD8 +和CD4 + T细胞的增殖率以及DC的迁移,可以决定细菌清除与不受控制的细菌生长和传播之间的差异。