• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

将实时含时密度泛函理论与可极化力场相结合。

Coupling Real-Time Time-Dependent Density Functional Theory with Polarizable Force Field.

作者信息

Donati Greta, Wildman Andrew, Caprasecca Stefano, Lingerfelt David B, Lipparini Filippo, Mennucci Benedetta, Li Xiaosong

机构信息

Department of Chemistry, University of Washington , Seattle, Washington 98195, United States.

Dipartimento di Chimica e Chimica Industriale, Università di Pisa , Via G. Moruzzi 13, 56124 Pisa, Italy.

出版信息

J Phys Chem Lett. 2017 Nov 2;8(21):5283-5289. doi: 10.1021/acs.jpclett.7b02320. Epub 2017 Oct 13.

DOI:10.1021/acs.jpclett.7b02320
PMID:28994290
Abstract

Real-time time-dependent density functional theory (RT-TDDFT) is a powerful tool for obtaining spectroscopic observables and understanding complex, time-dependent properties. Currently, performing RT-TDDFT calculations on large, fully quantum mechanical systems is not computationally feasible. Previously, polarizable mixed quantum mechanical and molecular mechanical (QM/MMPol) models have been successful in providing accurate, yet efficient, approximations to a fully quantum mechanical system. Here we develop a coupling scheme between induced dipole based QM/MMPol and RT-TDDFT. Our approach is validated by comparing calculated spectra with both real-time and linear-response TDDFT calculations. The model developed within provides an accurate method for performing RT-TDDFT calculations on extended systems while accounting for mutual polarization between the quantum mechanical and molecular mechanical regions.

摘要

实时含时密度泛函理论(RT-TDDFT)是获取光谱可观测量以及理解复杂含时性质的有力工具。目前,对大型全量子力学系统进行RT-TDDFT计算在计算上是不可行的。此前,可极化混合量子力学与分子力学(QM/MMPol)模型已成功地为全量子力学系统提供了准确而高效的近似。在此,我们开发了一种基于诱导偶极子的QM/MMPol与RT-TDDFT之间的耦合方案。我们通过将计算光谱与实时和线性响应TDDFT计算结果进行比较来验证我们的方法。在此开发的模型提供了一种在考虑量子力学区域和分子力学区域之间的相互极化的同时,对扩展系统进行RT-TDDFT计算的准确方法。

相似文献

1
Coupling Real-Time Time-Dependent Density Functional Theory with Polarizable Force Field.将实时含时密度泛函理论与可极化力场相结合。
J Phys Chem Lett. 2017 Nov 2;8(21):5283-5289. doi: 10.1021/acs.jpclett.7b02320. Epub 2017 Oct 13.
2
Quantum mechanical/molecular mechanical/continuum style solvation model: time-dependent density functional theory.量子力学/分子力学/连续体风格溶剂化模型:含时密度泛函理论。
J Chem Phys. 2013 Aug 28;139(8):084106. doi: 10.1063/1.4819139.
3
Analytic energy gradient of excited electronic state within TDDFT/MMpol framework: Benchmark tests and parallel implementation.含时密度泛函理论/极化分子力学框架下激发电子态的解析能量梯度:基准测试与并行实现
J Chem Phys. 2015 Oct 7;143(13):134104. doi: 10.1063/1.4931734.
4
Simulating Electron Dynamics in Polarizable Environments.在可极化环境中模拟电子动力学。
J Chem Theory Comput. 2017 Sep 12;13(9):3985-4002. doi: 10.1021/acs.jctc.7b00251. Epub 2017 Aug 17.
5
Chromophore-protein coupling beyond nonpolarizable models: understanding absorption in green fluorescent protein.超越非极化模型的发色团-蛋白质偶联:理解绿色荧光蛋白中的吸收现象
J Chem Theory Comput. 2015 Oct 13;11(10):4825-39. doi: 10.1021/acs.jctc.5b00650. Epub 2015 Sep 16.
6
QuanPol: a full spectrum and seamless QM/MM program.全量子力学/分子力学混合程序 QuanPol:全谱无缝。
J Comput Chem. 2013 Dec 15;34(32):2816-33. doi: 10.1002/jcc.23435. Epub 2013 Sep 30.
7
A TDDFT/MMPol/PCM model for the simulation of exciton-coupled circular dichroism spectra.
Phys Chem Chem Phys. 2014 Aug 21;16(31):16407-18. doi: 10.1039/c3cp55428g.
8
Quantum Mechanics/Extremely Localized Molecular Orbital Embedding Strategy for Excited States: Coupling to Time-Dependent Density Functional Theory and Equation-of-Motion Coupled Cluster.量子力学/极度局域分子轨道嵌入策略用于激发态:与含时密度泛函理论和运动方程耦合簇的耦合。
J Chem Theory Comput. 2020 Dec 8;16(12):7490-7506. doi: 10.1021/acs.jctc.0c00956. Epub 2020 Nov 26.
9
Accelerating Realtime TDDFT with Block-Orthogonalized Manby-Miller Embedding Theory.利用块正交化曼比-米勒嵌入理论加速实时含时密度泛函理论
J Chem Theory Comput. 2017 Sep 12;13(9):4173-4178. doi: 10.1021/acs.jctc.7b00494. Epub 2017 Aug 4.
10
Geometry Optimization in Polarizable QM/MM Models: The Induced Dipole Formulation.可极化量子力学/分子力学模型中的几何优化:诱导偶极子公式
J Chem Theory Comput. 2014 Apr 8;10(4):1588-98. doi: 10.1021/ct500021d.

引用本文的文献

1
Understanding Charge Dynamics in Dense Electronic Manifolds in Complex Environments.理解复杂环境中密集电子流形中的电荷动力学。
J Chem Theory Comput. 2023 Jan 5;19(2):626-39. doi: 10.1021/acs.jctc.2c00794.
2
Environmental Effects with Frozen-Density Embedding in Real-Time Time-Dependent Density Functional Theory Using Localized Basis Functions.实时含时密度泛函理论中冻结密度嵌入的环境效应:基于局域基函数方法
J Chem Theory Comput. 2020 Sep 8;16(9):5695-5711. doi: 10.1021/acs.jctc.0c00603. Epub 2020 Aug 15.
3
Real-Time Propagation TDDFT and Density Analysis for Exciton Coupling Calculations in Large Systems.
用于大体系中激子耦合计算的实时传播时域密度泛函理论及密度分析
J Chem Theory Comput. 2019 Jun 11;15(6):3743-3754. doi: 10.1021/acs.jctc.9b00209. Epub 2019 May 28.
4
Molecular Simulations with in-deMon2k QM/MM, a Tutorial-Review.分子模拟与 in-deMon2kQM/MM,教程综述。
Molecules. 2019 Apr 26;24(9):1653. doi: 10.3390/molecules24091653.