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新种海滨诺卡氏菌,从湖边土壤中分离得到。

Nocardioides litorisoli sp. nov., isolated from lakeside soil.

作者信息

Wang Yu, Xu Ding, Luo Anna, Wang Gejiao, Zheng Shixue

机构信息

State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, PR China.

出版信息

Int J Syst Evol Microbiol. 2017 Oct;67(10):4216-4220. doi: 10.1099/ijsem.0.002283.

DOI:10.1099/ijsem.0.002283
PMID:29022545
Abstract

A Gram-stain-positive, rod-shaped, non-spore-forming bacterium, designated as x-2, was isolated from lakeside soil of Sayram in the Xinjiang Uygur Autonomous Region, PR China. On the basis of 16S rRNA gene sequences, strain x-2 belongs to the genus Nocardioides in the family Nocardioidaceae, being most closely related to Nocardioides panacisoli Gsoil 346 (97.36 % 16S rRNA gene sequence similarity). Strain x-2 was characterized chemotaxonomically and found to have ll-diaminopimelic acid in the cell-wall peptidoglycan, phosphatidylglycerol, diphosphatidylglycerol, glycolipids and another three unknown phospholipids as the major polar lipids, MK-8(H4) as the predominant menaquinone and C18 : 1ω9c, iso-C16 : 0, C17 : 1ω8c and C16 : 0 as the major fatty acids. The genomic DNA G+C content of the novel strain was 71.1 mol%. The level of DNA-DNA relatedness between strain x-2 and N. panacisoli KCTC 19470 (=Gsoil 346) was 29.8 %. These chemotaxonomic characters support the position of strain x-2 within the genus Nocardioides. The results of physiological and biochemical tests, as well as phylogenetic analysis, suggest that strain x-2 represents a novel species of the genus Nocardioides, for which the name Nocardioides litorisoli sp. nov. is proposed. The type strain is x-2 (=KCTC 39845=CCTCCAB 2016255).

摘要

从中国新疆维吾尔自治区赛里木湖湖滨土壤中分离出一株革兰氏染色阳性、杆状、不产芽孢的细菌,命名为x-2。基于16S rRNA基因序列,菌株x-2属于诺卡氏菌科诺卡氏菌属,与泛酸诺卡氏菌Gsoil 346关系最为密切(16S rRNA基因序列相似性为97.36%)。对菌株x-2进行了化学分类学特征分析,发现其细胞壁肽聚糖中含有ll-二氨基庚二酸,主要极性脂为磷脂酰甘油、二磷脂酰甘油、糖脂和另外三种未知磷脂,主要甲基萘醌为MK-8(H4),主要脂肪酸为C18 : 1ω9c、异-C16 : 0、C17 : 1ω8c和C16 : 0。该新菌株的基因组DNA G+C含量为71.1 mol%。菌株x-2与泛酸诺卡氏菌KCTC 19470(=Gsoil 346)之间的DNA-DNA杂交率为29.8%。这些化学分类学特征支持了菌株x-2在诺卡氏菌属中的地位。生理生化测试和系统发育分析结果表明,菌株x-2代表诺卡氏菌属的一个新物种,为此提出了新名称诺卡氏菌湖滨新种。模式菌株为x-2(=KCTC 39845=CCTCCAB 2016255)。

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