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对NRRL B - 4156和NRRL B - 23460硫胺素代谢的基因组学见解。

Genomic insights into the thiamin metabolism of NRRL B-4156 and NRRL B-23460.

作者信息

Sannino David, Angert Esther R

机构信息

Cornell University, Ithaca, NY USA.

出版信息

Stand Genomic Sci. 2017 Oct 3;12:59. doi: 10.1186/s40793-017-0276-9. eCollection 2017.

Abstract

is the model organism for studying thiaminase I, an enigmatic extracellular enzyme. Originally isolated from the feces of clinical patients suffering from thiamin deficiency, has been implicated in thiamin deficiencies in humans and other animals due to its ability to produce this thiamin-degrading enzyme. Its close relative, also produces thiaminase I and was originally isolated from dead honeybee larvae, though it has not been reported to be a honeybee pathogen. We generated draft genomes of the type strains of both species, NRRL B-4156 and NRRL B-23460, to deeply explore potential routes of thiamin metabolism. We discovered that the thiaminase I gene is located in a highly conserved operon with thiamin biosynthesis and salvage genes, as well as genes involved in the biosynthesis of the antibiotic bacimethrin. Based on metabolic pathway predictions, NRRL B-23460 has the genomic capacity to synthesize thiamin using a pathway that is rarely seen in bacteria, but NRRL B-4156 is a thiamin auxotroph. Both genomes encode importers for thiamin and the pyrimidine moiety of thiamin, as well as enzymes to synthesize thiamin from pyrimidine and thiazole.

摘要

是研究硫胺素酶I的模式生物,硫胺素酶I是一种神秘的细胞外酶。最初从患有硫胺素缺乏症的临床患者粪便中分离出来,由于其产生这种硫胺素降解酶的能力,它与人类和其他动物的硫胺素缺乏症有关。它的近亲,也产生硫胺素酶I,最初是从死亡的蜜蜂幼虫中分离出来的,尽管尚未报道它是蜜蜂病原体。我们生成了这两个物种的模式菌株NRRL B - 4156和NRRL B - 23460的基因组草图,以深入探索硫胺素代谢的潜在途径。我们发现硫胺素酶I基因位于一个高度保守的操纵子中,该操纵子包含硫胺素生物合成和补救基因,以及参与抗生素杆菌肽生物合成的基因。基于代谢途径预测,NRRL B - 23460具有利用一种在细菌中很少见的途径合成硫胺素的基因组能力,但NRRL B - 4156是硫胺素营养缺陷型。两个基因组都编码硫胺素及其嘧啶部分的转运体,以及从嘧啶和噻唑合成硫胺素的酶。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e53f/5627462/d3c4609b8b36/40793_2017_276_Fig1_HTML.jpg

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