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群体感应调节因子Rgg2中的激活突变及其在不存在分子间二硫键情况下的构象灵活性。

Activating mutations in quorum-sensing regulator Rgg2 and its conformational flexibility in the absence of an intermolecular disulfide bond.

作者信息

Wilkening Reid V, Capodagli Glenn C, Khataokar Atul, Tylor Kaitlyn M, Neiditch Matthew B, Federle Michael J

机构信息

From the Department of Microbiology and Immunology, University of Illinois at Chicago, Chicago, Illinois 60607.

the Department of Microbiology, Biochemistry, and Molecular Genetics, New Jersey Medical School, Rutgers, State University of New Jersey, Newark, New Jersey 07103, and.

出版信息

J Biol Chem. 2017 Dec 15;292(50):20544-20557. doi: 10.1074/jbc.M117.801670. Epub 2017 Oct 13.

Abstract

Rap/Rgg/NprR/PlcR/PrgX (RRNPP) quorum-sensing systems use extracellular peptide pheromones that are detected by cytoplasmic receptors to regulate gene expression in firmicute bacteria. Rgg-type receptors are allosterically regulated through direct pheromone binding to control transcriptional activity; however, the receptor activation mechanism remains poorly understood. Previous work has identified a disulfide bond between Cys-45 residues within the homodimer interface of Rgg2 from (Rgg2). Here, we compared two Rgg2(C45S) X-ray crystal structures with that of wild-type Rgg2 and found that in the absence of the intermolecular disulfide, the Rgg2 dimer interface is destabilized and Rgg2 can adopt multiple conformations. One conformation closely resembled the "disulfide-locked" Rgg2 secondary and tertiary structures, but another displayed more extensive rigid-body shifts as well as dramatic secondary structure changes. In parallel experiments, a genetic screen was used to identify mutations in of ( ) that conferred pheromone-independent transcriptional activation of an Rgg2-stimulated promoter. Eight mutations yielding constitutive Rgg2 activity, designated Rgg2*, were identified, and five of them clustered in or near an Rgg2 region that underwent conformational changes in one of the Rgg2(C45S) crystal structures. The Rgg2* mutations increased Rgg2 sensitivity to pheromone and pheromone variants while displaying decreased sensitivity to the Rgg2 antagonist cyclosporine A. We propose that Rgg2* mutations invoke shifts in free-energy bias to favor the active state of the protein. Finally, we present evidence for an electrostatic interaction between an N-terminal Asp of the pheromone and Arg-153 within the proposed pheromone-binding pocket of Rgg2.

摘要

Rap/Rgg/NprR/PlcR/PrgX(RRNPP)群体感应系统利用细胞外肽信息素,这些信息素由细胞质受体检测,以调节厚壁菌门细菌中的基因表达。Rgg型受体通过直接结合信息素进行变构调节,以控制转录活性;然而,受体激活机制仍知之甚少。先前的研究已经确定了来自[具体来源未提及]的Rgg2同型二聚体界面内Cys-45残基之间的二硫键(Rgg2)。在这里,我们将两个Rgg2(C45S)X射线晶体结构与野生型Rgg2的结构进行了比较,发现不存在分子间二硫键时,Rgg2二聚体界面不稳定,Rgg2可以采用多种构象。一种构象与“二硫键锁定”的Rgg2二级和三级结构非常相似,但另一种构象显示出更广泛的刚体位移以及显著的二级结构变化。在平行实验中,利用遗传筛选来鉴定[具体来源未提及]中赋予Rgg2刺激的启动子信息素非依赖性转录激活的突变。鉴定出了八个产生组成型Rgg2活性的突变,命名为Rgg2*,其中五个聚集在Rgg2的一个区域内或附近,该区域在Rgg2(C45S)晶体结构之一中发生了构象变化。Rgg2突变增加了Rgg2对信息素和信息素变体的敏感性,同时对Rgg2拮抗剂环孢素A的敏感性降低。我们提出,Rgg2突变引发自由能偏差的变化,以有利于蛋白质的活性状态。最后,我们提供了证据,证明信息素的N端天冬氨酸与Rgg2拟信息素结合口袋内的Arg-153之间存在静电相互作用。

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