Zolotarev Nikolay, Maksimenko Oksana, Kyrchanova Olga, Sokolinskaya Elena, Osadchiy Igor, Girardot Charles, Bonchuk Artem, Ciglar Lucia, Furlong Eileen E M, Georgiev Pavel
Institute of Gene Biology, Russian Academy of Sciences, 34/5 Vavilova St., Moscow 119334, Russia.
Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow 119234, Russia.
Nucleic Acids Res. 2017 Dec 1;45(21):12285-12300. doi: 10.1093/nar/gkx840.
A special class of poorly characterized architectural proteins is required for chromatin topology and enhancer-promoter interactions. Here, we identify Opbp as a new Drosophila architectural protein, interacting with CP190 both in vivo and in vitro. Opbp binds to a very restrictive set of genomic regions, through a rare sequence specific motif. These sites are co-bound by CP190 in vivo, and generally located at bidirectional promoters of ribosomal protein genes. We show that Opbp is essential for viability, and loss of opbp function, or destruction of its motif, leads to reduced ribosomal protein gene expression, indicating a functional role in promoter activation. As characteristic of architectural/insulator proteins, the Opbp motif is sufficient for distance-dependent reporter gene activation and enhancer-blocking activity, suggesting an Opbp-mediated enhancer-promoter interaction. Rather than having a constitutive role, Opbp represents a new type of architectural protein with a very restricted, yet essential, function in regulation of housekeeping gene expression.
染色质拓扑结构和增强子-启动子相互作用需要一类特征不明的特殊结构蛋白。在此,我们鉴定出Opbp是一种新的果蝇结构蛋白,在体内和体外均与CP190相互作用。Opbp通过一种罕见的序列特异性基序与一组非常有限的基因组区域结合。这些位点在体内与CP190共同结合,且通常位于核糖体蛋白基因的双向启动子处。我们表明Opbp对生存力至关重要,opbp功能丧失或其基序破坏会导致核糖体蛋白基因表达降低,表明其在启动子激活中具有功能作用。作为结构/绝缘子蛋白的特征,Opbp基序足以实现距离依赖性报告基因激活和增强子阻断活性,提示存在Opbp介导的增强子-启动子相互作用。Opbp并非具有组成性作用,而是代表一种新型结构蛋白,在管家基因表达调控中具有非常有限但必不可少的功能。