Center for Applied Genetic Technologies, University of Georgia, Athens, GA.
Department of Horticulture, University of Georgia, Tifton, GA.
Mol Biol Evol. 2018 Feb 1;35(2):354-364. doi: 10.1093/molbev/msx275.
Even though lateral movements of transposons across families and even phyla within multicellular eukaryotic kingdoms have been found, little is known about transposon transfer between the kingdoms Animalia and Plantae. We discovered a novel non-LTR retrotransposon, AdLINE3, in a wild peanut species. Sequence comparisons and phylogenetic analyses indicated that AdLINE3 is a member of the RTE clade, originally identified in a nematode and rarely reported in plants. We identified RTE elements in 82 plants, spanning angiosperms to algae, including recently active elements in some flowering plants. RTE elements in flowering plants were likely derived from a single family we refer to as An-RTE. Interestingly, An-RTEs show significant DNA sequence identity with non-LTR retroelements from 42 animals belonging to four phyla. Moreover, the sequence identity of RTEs between two arthropods and two plants was higher than that of homologous genes. Phylogenetic and evolutionary analyses of RTEs from both animals and plants suggest that the An-RTE family was likely transferred horizontally into angiosperms from an ancient aphid(s) or ancestral arthropod(s). Notably, some An-RTEs were recruited as coding sequences of functional genes participating in metabolic or other biochemical processes in plants. This is the first potential example of horizontal transfer of transposons between animals and flowering plants. Our findings help to understand exchanges of genetic material between the kingdom Animalia and Plantae and suggest arthropods likely impacted on plant genome evolution.
尽管已经发现转座子在多细胞真核生物王国的家族之间甚至门之间的横向移动,但关于动物界和植物界之间转座子的转移却知之甚少。我们在一种野生花生中发现了一种新型非 LTR 反转录转座子,AdLINE3。序列比较和系统发育分析表明,AdLINE3 是 RTE 分支的一个成员,最初在一种线虫中发现,在植物中很少报道。我们在 82 种植物中鉴定出了 RTE 元件,涵盖了被子植物到藻类,包括一些开花植物中最近活跃的元件。开花植物中的 RTE 元件可能源自我们称为 An-RTE 的一个单一家族。有趣的是,An-RTE 与来自四个门的 42 种动物的非 LTR 反转录元件具有显著的 DNA 序列同一性。此外,两种节肢动物和两种植物之间的 RTE 序列同一性高于同源基因。来自动物和植物的 RTE 的系统发育和进化分析表明,An-RTE 家族可能是从古老的蚜虫或祖先节肢动物横向转移到被子植物中的。值得注意的是,一些 An-RTE 被招募为参与植物代谢或其他生化过程的功能基因的编码序列。这是转座子在动物和开花植物之间水平转移的第一个潜在例子。我们的研究结果有助于了解动物界和植物界之间遗传物质的交换,并表明节肢动物可能影响了植物基因组的进化。