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在水微滴中无生命的糖磷酸盐和尿苷核糖核苷的产生。

Abiotic production of sugar phosphates and uridine ribonucleoside in aqueous microdroplets.

机构信息

Department of Chemistry, Stanford University, Stanford, CA 94305.

Center for Plant Aging Research, Institute for Basic Science, Daegu 42988, Republic of Korea.

出版信息

Proc Natl Acad Sci U S A. 2017 Nov 21;114(47):12396-12400. doi: 10.1073/pnas.1714896114. Epub 2017 Oct 23.

DOI:10.1073/pnas.1714896114
PMID:29078402
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5703324/
Abstract

Phosphorylation is an essential chemical reaction for life. This reaction generates fundamental cell components, including building blocks for RNA and DNA, phospholipids for cell walls, and adenosine triphosphate (ATP) for energy storage. However, phosphorylation reactions are thermodynamically unfavorable in solution. Consequently, a long-standing question in prebiotic chemistry is how abiotic phosphorylation occurs in biological compounds. We find that the phosphorylation of various sugars to form sugar-1-phosphates can proceed spontaneously in aqueous microdroplets containing a simple mixture of sugars and phosphoric acid. The yield for d-ribose-1-phosphate reached over 6% at room temperature, giving a Δ value of -1.1 kcal/mol, much lower than the +5.4 kcal/mol for the reaction in bulk solution. The temperature dependence of the product yield for the phosphorylation in microdroplets revealed a negative enthalpy change (Δ = -0.9 kcal/mol) and a negligible change of entropy (Δ = 0.0007 kcal/mol·K). Thus, the spontaneous phosphorylation reaction in microdroplets occurred by overcoming the entropic hurdle of the reaction encountered in bulk solution. Moreover, uridine, a pyrimidine ribonucleoside, is generated in aqueous microdroplets containing d-ribose, phosphoric acid, and uracil, which suggests the possibility that microdroplets could serve as a prebiotic synthetic pathway for ribonucleosides.

摘要

磷酸化是生命中一种基本的化学反应。该反应生成了基本的细胞成分,包括 RNA 和 DNA 的构建块、细胞壁的磷脂以及能量储存的三磷酸腺苷 (ATP)。然而,在溶液中,磷酸化反应在热力学上是不利的。因此,在原始化学中,一个长期存在的问题是生物化合物中的非生物磷酸化是如何发生的。我们发现,在含有简单糖和磷酸混合物的水微滴中,各种糖自发地转化为糖-1-磷酸。在室温下,d-核糖-1-磷酸的产率超过 6%,Δ 值为-1.1 千卡/摩尔,远低于在大量溶液中的反应的+5.4 千卡/摩尔。微滴中磷酸化产物产率的温度依赖性揭示了负的焓变(Δ=-0.9 千卡/摩尔)和可忽略不计的熵变(Δ=0.0007 千卡/摩尔·K)。因此,微滴中自发的磷酸化反应通过克服了在大量溶液中反应遇到的熵障碍而发生。此外,在含有 d-核糖、磷酸和尿嘧啶的水微滴中生成了嘧啶核糖核苷尿苷,这表明微滴可能是核糖核苷的原始合成途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/657e14af7f5e/pnas.1714896114fig04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/a2e52098d6a8/pnas.1714896114fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/a7de1f378993/pnas.1714896114sfig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/a5befed967f4/pnas.1714896114sfig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/4fd97d684420/pnas.1714896114sfig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/e64daa2cabdd/pnas.1714896114sfig04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/f717f8c1106e/pnas.1714896114sfig05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/5336a8a68cce/pnas.1714896114fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/f59d6a9e5efd/pnas.1714896114fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/7fc323521784/pnas.1714896114sfig06.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/657e14af7f5e/pnas.1714896114fig04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/a2e52098d6a8/pnas.1714896114fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/a7de1f378993/pnas.1714896114sfig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/a5befed967f4/pnas.1714896114sfig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/4fd97d684420/pnas.1714896114sfig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/e64daa2cabdd/pnas.1714896114sfig04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/f717f8c1106e/pnas.1714896114sfig05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/5336a8a68cce/pnas.1714896114fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/f59d6a9e5efd/pnas.1714896114fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/7fc323521784/pnas.1714896114sfig06.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/99a8/5703324/657e14af7f5e/pnas.1714896114fig04.jpg

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