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Genomicus 2018:核型进化树和实时共线性计算。

Genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing.

机构信息

Ecole Normale Supérieure, Institut de Biologie de l'ENS, IBENS, Paris F-75005, France.

Inserm, U1024, Paris F-75005, France.

出版信息

Nucleic Acids Res. 2018 Jan 4;46(D1):D816-D822. doi: 10.1093/nar/gkx1003.

Abstract

Since 2010, the Genomicus web server is available online at http://genomicus.biologie.ens.fr/genomicus. This graphical browser provides access to comparative genomic analyses in four different phyla (Vertebrate, Plants, Fungi, and non vertebrate Metazoans). Users can analyse genomic information from extant species, as well as ancestral gene content and gene order for vertebrates and flowering plants, in an integrated evolutionary context. New analyses and visualization tools have recently been implemented in Genomicus Vertebrate. Karyotype structures from several genomes can now be compared along an evolutionary pathway (Multi-KaryotypeView), and synteny blocks can be computed and visualized between any two genomes (PhylDiagView).

摘要

自 2010 年以来,Genomicus 网络服务器可在 http://genomicus.biologie.ens.fr/genomicus 上在线访问。该图形浏览器提供了对四个不同门(脊椎动物、植物、真菌和非脊椎后生动物)的比较基因组分析的访问。用户可以在综合进化背景下分析来自现存物种以及脊椎动物和开花植物的祖先基因内容和基因顺序的基因组信息。最近在 Genomicus Vertebrate 中实现了新的分析和可视化工具。现在可以沿着进化途径比较来自多个基因组的染色体结构(Multi-KaryotypeView),并且可以在任何两个基因组之间计算和可视化同线性块(PhylDiagView)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3baf/5753199/05481935320d/gkx1003fig1.jpg

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