Murata Daichi, Okano Hiroyuki, Angkawidjaja Clement, Akutsu Masato, Tanaka Shun-Ichi, Kitahara Kenyu, Yoshizawa Takuya, Matsumura Hiroyoshi, Kado Yuji, Mizohata Eiichi, Inoue Tsuyoshi, Sano Satoshi, Koga Yuichi, Kanaya Shigenori, Takano Kazufumi
Department of Biomolecular Chemistry, Kyoto Prefectural University , Hangi-cho, Shimogamo, Sakyo-ku, Kyoto 606-8522, Japan.
Graduate School of Engineering, Osaka University , Yamadaoka, Suita 565-0871, Japan.
Biochemistry. 2017 Nov 28;56(47):6281-6291. doi: 10.1021/acs.biochem.7b00985. Epub 2017 Nov 10.
Serratia marcescens secretes a lipase, LipA, through a type I secretion system (T1SS). The T1SS for LipA, the Lip system, is composed of an inner membrane ABC transporter with its nucleotide-binding domains (NBD), LipB, a membrane fusion protein, LipC, and an outer membrane channel protein, LipD. Passenger protein secreted by this system has been functionally and structurally characterized well, but relatively little information about the transporter complex is available. Here, we report the crystallographic studies of LipC without the membrane anchor region, LipC-, and the NBD of LipB (LipB-NBD). LipC- crystallographic analysis has led to the determination of the structure of the long α-helical and lipoyl domains, but not the area where it interacts with LipB, suggesting that the region is flexible without LipB. The long α-helical domain has three α-helices, which interacts with LipD in the periplasm. LipB-NBD has the common overall architecture and ATP hydrolysis activity of ABC transporter NBDs. Using the predicted models of full-length LipB and LipD, the overall structural insight into the Lip system is discussed.
粘质沙雷氏菌通过I型分泌系统(T1SS)分泌一种脂肪酶LipA。负责分泌LipA的T1SS即Lip系统,由一个带有核苷酸结合结构域(NBD)的内膜ABC转运蛋白LipB、一个膜融合蛋白LipC和一个外膜通道蛋白LipD组成。该系统分泌的乘客蛋白在功能和结构上已得到充分表征,但关于转运蛋白复合体的信息相对较少。在此,我们报告了去除膜锚定区域的LipC(LipC-)和LipB的NBD(LipB-NBD)的晶体学研究。LipC-的晶体学分析确定了长α-螺旋结构域和硫辛酰结构域的结构,但未确定其与LipB相互作用的区域,这表明该区域在没有LipB的情况下是灵活的。长α-螺旋结构域有三个α-螺旋,它们在周质中与LipD相互作用。LipB-NBD具有ABC转运蛋白NBD的常见整体结构和ATP水解活性。利用全长LipB和LipD的预测模型,讨论了对Lip系统的整体结构认识。