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新西兰树螽(直翅目,丑螽科)生殖蛋白的正选择与比较分子进化

Positive selection and comparative molecular evolution of reproductive proteins from New Zealand tree weta (Orthoptera, Hemideina).

作者信息

Twort Victoria G, Dennis Alice B, Park Duckchul, Lomas Kathryn F, Newcomb Richard D, Buckley Thomas R

机构信息

School of Biological Sciences, The University of Auckland, Auckland, New Zealand.

Landcare Research, Auckland, New Zealand.

出版信息

PLoS One. 2017 Nov 13;12(11):e0188147. doi: 10.1371/journal.pone.0188147. eCollection 2017.

Abstract

Animal reproductive proteins, especially those in the seminal fluid, have been shown to have higher levels of divergence than non-reproductive proteins and are often evolving adaptively. Seminal fluid proteins have been implicated in the formation of reproductive barriers between diverging lineages, and hence represent interesting candidates underlying speciation. RNA-seq was used to generate the first male reproductive transcriptome for the New Zealand tree weta species Hemideina thoracica and H. crassidens. We identified 865 putative reproductive associated proteins across both species, encompassing a diverse range of functional classes. Candidate gene sequencing of nine genes across three Hemideina, and two Deinacrida species suggests that H. thoracica has the highest levels of intraspecific genetic diversity. Non-monophyly was observed in the majority of sequenced genes indicating that either gene flow may be occurring between the species, or that reciprocal monophyly at these loci has yet to be attained. Evidence for positive selection was found for one lectin-related reproductive protein, with an overall omega of 7.65 and one site in particular being under strong positive selection. This candidate gene represents the first step in the identification of proteins underlying the evolutionary basis of weta reproduction and speciation.

摘要

动物生殖蛋白,尤其是精液中的蛋白,已被证明比非生殖蛋白具有更高的分化水平,并且通常在适应性进化。精液蛋白与分化谱系之间生殖屏障的形成有关,因此是物种形成潜在的有趣候选因素。RNA测序被用于生成新西兰树螽物种胸棘斧须螽和粗棘斧须螽的首个雄性生殖转录组。我们在这两个物种中鉴定出865种假定的生殖相关蛋白,涵盖了多种功能类别。对三个斧须螽属物种和两个丑螽属物种的九个基因进行候选基因测序表明,胸棘斧须螽具有最高水平的种内遗传多样性。在大多数测序基因中观察到非单系性,这表明要么物种之间可能正在发生基因流动,要么这些位点尚未实现相互单系性。在一种与凝集素相关的生殖蛋白中发现了正选择的证据,其整体ω值为7.65,特别是有一个位点处于强烈的正选择之下。这个候选基因代表了鉴定树螽繁殖和物种形成进化基础的相关蛋白的第一步。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/309f/5683631/7ca70904377c/pone.0188147.g001.jpg

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