Department of Chemistry and Biochemistry, University of Delaware, Newark, DE, 19716, USA.
Pittsburgh Center for HIV Protein Interactions, University of Pittsburgh School of Medicine, 1051 Biomedical Science Tower 3, 3501 Fifth Ave., Pittsburgh, PA, 15261, USA.
Nat Commun. 2017 Nov 24;8(1):1779. doi: 10.1038/s41467-017-01856-y.
Maturation of HIV-1 particles encompasses a complex morphological transformation of Gag via an orchestrated series of proteolytic cleavage events. A longstanding question concerns the structure of the C-terminal region of CA and the peptide SP1 (CA-SP1), which represents an intermediate during maturation of the HIV-1 virus. By integrating NMR, cryo-EM, and molecular dynamics simulations, we show that in CA-SP1 tubes assembled in vitro, which represent the features of an intermediate assembly state during maturation, the SP1 peptide exists in a dynamic helix-coil equilibrium, and that the addition of the maturation inhibitors Bevirimat and DFH-055 causes stabilization of a helical form of SP1. Moreover, the maturation-arresting SP1 mutation T8I also induces helical structure in SP1 and further global dynamical and conformational changes in CA. Overall, our results show that dynamics of CA and SP1 are critical for orderly HIV-1 maturation and that small molecules can inhibit maturation by perturbing molecular motions.
HIV-1 颗粒的成熟包括通过一系列协调的蛋白水解切割事件使 Gag 发生复杂的形态转变。一个长期存在的问题涉及 CA 的 C 末端区域和肽 SP1(CA-SP1)的结构,这代表了 HIV-1 病毒成熟过程中的一个中间产物。通过整合 NMR、冷冻电镜和分子动力学模拟,我们表明在体外组装的 CA-SP1 管中,该管代表成熟过程中中间组装状态的特征,SP1 肽处于动态的螺旋-线圈平衡中,并且成熟抑制剂 Bevirimat 和 DFH-055 的添加导致 SP1 的螺旋形式的稳定。此外,成熟停滞的 SP1 突变 T8I 也诱导 SP1 中的螺旋结构以及 CA 中的进一步全局动力学和构象变化。总的来说,我们的结果表明 CA 和 SP1 的动力学对于有序的 HIV-1 成熟至关重要,并且小分子可以通过扰乱分子运动来抑制成熟。