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全反式维甲酸诱导的乳腺癌细胞转录反应特征分析揭示了基因表达的 RARE 非依赖性机制。

Profiling of the transcriptional response to all-trans retinoic acid in breast cancer cells reveals RARE-independent mechanisms of gene expression.

机构信息

Department of Pathology, Dalhousie University, Halifax, NS, Canada.

Department of Microbiology & Immunology, Dalhousie University, Halifax, NS, Canada.

出版信息

Sci Rep. 2017 Nov 30;7(1):16684. doi: 10.1038/s41598-017-16687-6.

DOI:10.1038/s41598-017-16687-6
PMID:29192143
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5709375/
Abstract

Retinoids, derivatives of vitamin A, are key physiological molecules with regulatory effects on cell differentiation, proliferation and apoptosis. As a result, they are of interest for cancer therapy. Specifically, models of breast cancer have varied responses to manipulations of retinoid signaling. This study characterizes the transcriptional response of MDA-MB-231 and MDA-MB-468 breast cancer cells to retinaldehyde dehydrogenase 1A3 (ALDH1A3) and all-trans retinoic acid (atRA). We demonstrate limited overlap between ALDH1A3-induced gene expression and atRA-induced gene expression in both cell lines, suggesting that the function of ALDH1A3 in breast cancer progression extends beyond its role as a retinaldehyde dehydrogenase. Our data reveals divergent transcriptional responses to atRA, which are largely independent of genomic retinoic acid response elements (RAREs) and consistent with the opposing responses of MDA-MB-231 and MDA-MB-468 to in vivo atRA treatment. We identify transcription factors associated with each gene set. Manipulation of the IRF1 transcription factor demonstrates that it is the level of atRA-inducible and epigenetically regulated transcription factors that determine expression of target genes (e.g. CTSS, cathepsin S). This study provides a paradigm for complex responses of breast cancer models to atRA treatment, and illustrates the need to characterize RARE-independent responses to atRA in a variety of models.

摘要

视黄醇类,维生素 A 的衍生物,是对细胞分化、增殖和凋亡具有调节作用的关键生理分子。因此,它们是癌症治疗的研究热点。具体来说,乳腺癌模型对视黄醇信号转导的操作有不同的反应。本研究描述了 MDA-MB-231 和 MDA-MB-468 乳腺癌细胞对醛脱氢酶 1A3(ALDH1A3)和全反式视黄酸(atRA)的转录反应。我们证明了 ALDH1A3 诱导的基因表达与两种细胞系中 atRA 诱导的基因表达之间的重叠有限,这表明 ALDH1A3 在乳腺癌进展中的功能超出了其作为视黄醛脱氢酶的作用。我们的数据揭示了对 atRA 的不同转录反应,这些反应在很大程度上独立于基因组视黄酸反应元件(RAREs),并且与 MDA-MB-231 和 MDA-MB-468 对体内 atRA 治疗的相反反应一致。我们确定了与每个基因集相关的转录因子。IRF1 转录因子的操作表明,决定靶基因(例如 CTSS、组织蛋白酶 S)表达的是 atRA 诱导和表观遗传调节转录因子的水平。本研究为乳腺癌模型对 atRA 治疗的复杂反应提供了范例,并说明了在各种模型中表征 atRA 的 RARE 非依赖性反应的必要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0670/5709375/2a23cfca1a60/41598_2017_16687_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0670/5709375/9aa863a9eafa/41598_2017_16687_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0670/5709375/55ffed838ffa/41598_2017_16687_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0670/5709375/b980efd54601/41598_2017_16687_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0670/5709375/713b9c3b74af/41598_2017_16687_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0670/5709375/4caf86a3cb03/41598_2017_16687_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0670/5709375/2a23cfca1a60/41598_2017_16687_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0670/5709375/9aa863a9eafa/41598_2017_16687_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0670/5709375/55ffed838ffa/41598_2017_16687_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0670/5709375/b980efd54601/41598_2017_16687_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0670/5709375/713b9c3b74af/41598_2017_16687_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0670/5709375/4caf86a3cb03/41598_2017_16687_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0670/5709375/2a23cfca1a60/41598_2017_16687_Fig6_HTML.jpg

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