Department of Molecular Cardiology, Lerner Research Institute, Cleveland Clinic Foundation , Cleveland, Ohio 44195, United States.
J Chem Inf Model. 2018 Jan 22;58(1):182-193. doi: 10.1021/acs.jcim.7b00424. Epub 2017 Dec 27.
Crystal structures of the human angiotensin II type 1 receptor (ATR) complex with the antihypertensive agent ZD7155 (PDB id: 4YAY ) and the blood pressure medication Benicar (PDB id: 4ZUD ) showed that binding poses of both antagonists are similar. This finding implies that clinically used angiotensin receptor blocking (ARB) drugs may interact in a similar fashion. However, clinically observed differences in pharmacological and therapeutic efficacies of ARBs lead to the question of whether the dynamic interactions of ATR with ARBs vary. To address this, we performed induced-fit docking (IFD) of eight clinically used ARBs to ATR followed by 200 ns molecular dynamic (MD) simulation. The experimental K values for ARBs correlated remarkably well with calculated free energy with R = 0.95 and 0.70 for ATR-ARB models generated respectively by IFD and MD simulation. The eight ARB-ATR complexes share a common set of binding residues. In addition, MD simulation results validated by mutagenesis data discovered distinctive spatiotemporal interactions that display unique bonding between an individual ARB and ATR. These findings provide a reasonably broader picture reconciling the structure-based observations with clinical studies reporting efficacy variations for ARBs. The unique differences unraveled for ARBs in this study will be useful for structure-based design of the next generation of more potent and selective ARBs.
人血管紧张素 II 型 1 型受体 (ATR) 与降压药 ZD7155(PDB id: 4YAY)和降压药 Benicar(PDB id: 4ZUD)复合物的晶体结构显示,两种拮抗剂的结合构象相似。这一发现表明,临床上使用的血管紧张素受体阻断剂 (ARB) 药物可能以类似的方式相互作用。然而,临床上观察到 ARB 在药理学和治疗效果上的差异,导致了一个问题,即 ATR 与 ARB 的动态相互作用是否存在差异。为了解决这个问题,我们对 8 种临床上使用的 ARB 进行了诱导契合对接 (IFD),然后进行了 200ns 的分子动力学 (MD) 模拟。ARB 的实验 K 值与通过 IFD 和 MD 模拟分别生成的 ATR-ARB 模型的计算自由能具有很好的相关性,R 值分别为 0.95 和 0.70。这 8 个 ARB-ATR 复合物具有一组共同的结合残基。此外,通过突变数据验证的 MD 模拟结果揭示了独特的时空相互作用,显示了单个 ARB 和 ATR 之间独特的键合。这些发现为将基于结构的观察结果与报告 ARB 疗效变化的临床研究相结合提供了一个合理更广泛的图景。本研究中为 ARB 揭示的独特差异将有助于基于结构的下一代更有效和更具选择性的 ARB 的设计。